2yyf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{Seed}}
+
==Purification and structural characterization of a D-amino acid containing conopeptide, marmophine, from Conus marmoreus==
-
[[Image:2yyf.png|left|200px]]
+
<StructureSection load='2yyf' size='340' side='right' caption='[[2yyf]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2yyf]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YYF FirstGlance]. <br>
 +
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DPN:D-PHENYLALANINE'>DPN</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1qs3|1qs3]], [[1e75|1e75]], [[1jlp|1jlp]], [[1fu3|1fu3]]</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yyf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yyf RCSB], [http://www.ebi.ac.uk/pdbsum/2yyf PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Cone snails, a group of gastropod animals that inhabit tropical seas, are capable of producing a mixture of peptide neurotoxins, namely conotoxins, for defense and predation. Conotoxins are mainly disulfide-rich short peptides that act on different ion channels, neurotransmitter receptors, or transporters in the nervous system. They exhibit highly diverse compositions, structures, and biological functions. In this work, a novel Cys-free 15-residue conopeptide from Conus marmoreus was purified and designated as conomarphin. Conomarphin is unique because of its D-configuration Phe at the third residue from the C-terminus, which was identified using HPLC by comparing native conomarphin fragments and the corresponding synthetic peptides cleaved by different proteases. Surprisingly, the cDNA-encoded precursor of conomarphin was found to share the conserved signal peptide with other M-superfamily conotoxins, clearly indicating that conomarphin should belong to the M-superfamily, although conomarphin shares no homology with other six-Cys-containing M-superfamily conotoxins. Furthermore, NMR spectroscopy experiments established that conomarphin adopts a well-defined structure in solution, with a tight loop in the middle of the peptide and a short 3(10)-helix at the C-terminus. By contrast, no loop in L-Phe13-conomarphin was found, which suggests that D-Phe13 is essential for the structure of conomarphin. In conclusion, conomarphin may represent a new conotoxin family, whose biological activity remains to be identified.
-
<!--
+
Purification and structural characterization of a D-amino acid-containing conopeptide, conomarphin, from Conus marmoreus.,Han Y, Huang F, Jiang H, Liu L, Wang Q, Wang Y, Shao X, Chi C, Du W, Wang C FEBS J. 2008 May;275(9):1976-87. Epub 2008 Mar 18. PMID:18355315<ref>PMID:18355315</ref>
-
The line below this paragraph, containing "STRUCTURE_2yyf", creates the "Structure Box" on the page.
+
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
-
or leave the SCENE parameter empty for the default display.
+
-
-->
+
-
{{STRUCTURE_2yyf| PDB=2yyf | SCENE= }}
+
-
===Purification and structural characterization of a D-amino acid containing conopeptide, marmophine, from Conus marmoreus===
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18355315}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 18355315 is the PubMed ID number.
+
</StructureSection>
-
-->
+
-
{{ABSTRACT_PUBMED_18355315}}
+
-
 
+
-
==About this Structure==
+
-
2YYF is a [[Single protein]] structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYF OCA].
+
-
 
+
-
==Reference==
+
-
Purification and structural characterization of a d-amino acid-containing conopeptide, conomarphin, from Conus marmoreus., Han Y, Huang F, Jiang H, Liu L, Wang Q, Wang Y, Shao X, Chi C, Du W, Wang C, FEBS J. 2008 Mar 18;. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18355315 18355315]
+
-
[[Category: Single protein]]
+
[[Category: Du, W.]]
[[Category: Du, W.]]
[[Category: Han, Y.]]
[[Category: Han, Y.]]
Line 31: Line 25:
[[Category: M-conotoxin mr12]]
[[Category: M-conotoxin mr12]]
[[Category: Mr1931]]
[[Category: Mr1931]]
-
[[Category: Nmr]]
+
[[Category: Toxin]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 13:51:20 2008''
+

Revision as of 05:39, 10 October 2014

Purification and structural characterization of a D-amino acid containing conopeptide, marmophine, from Conus marmoreus

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools