1jl0

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[[Image:1jl0.jpg|left|200px]]<br /><applet load="1jl0" size="350" color="white" frame="true" align="right" spinBox="true"
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[[Image:1jl0.jpg|left|200px]]
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caption="1jl0, resolution 1.50&Aring;" />
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'''Structure of a Human S-Adenosylmethionine Decarboxylase Self-processing Ester Intermediate and Mechanism of Putrescine Stimulation of Processing as Revealed by the H243A Mutant'''<br />
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{{Structure
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|PDB= 1jl0 |SIZE=350|CAPTION= <scene name='initialview01'>1jl0</scene>, resolution 1.50&Aring;
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|SITE=
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|LIGAND= <scene name='pdbligand=PUT:1,4-DIAMINOBUTANE'>PUT</scene> and <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>
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|ACTIVITY= [http://en.wikipedia.org/wiki/Adenosylmethionine_decarboxylase Adenosylmethionine decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.50 4.1.1.50]
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|GENE=
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}}
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'''Structure of a Human S-Adenosylmethionine Decarboxylase Self-processing Ester Intermediate and Mechanism of Putrescine Stimulation of Processing as Revealed by the H243A Mutant'''
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==Overview==
==Overview==
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==About this Structure==
==About this Structure==
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1JL0 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=PUT:'>PUT</scene> and <scene name='pdbligand=TRS:'>TRS</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Adenosylmethionine_decarboxylase Adenosylmethionine decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.50 4.1.1.50] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JL0 OCA].
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1JL0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JL0 OCA].
==Reference==
==Reference==
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Structure of a human S-adenosylmethionine decarboxylase self-processing ester intermediate and mechanism of putrescine stimulation of processing as revealed by the H243A mutant., Ekstrom JL, Tolbert WD, Xiong H, Pegg AE, Ealick SE, Biochemistry. 2001 Aug 14;40(32):9495-504. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11583148 11583148]
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Structure of a human S-adenosylmethionine decarboxylase self-processing ester intermediate and mechanism of putrescine stimulation of processing as revealed by the H243A mutant., Ekstrom JL, Tolbert WD, Xiong H, Pegg AE, Ealick SE, Biochemistry. 2001 Aug 14;40(32):9495-504. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11583148 11583148]
[[Category: Adenosylmethionine decarboxylase]]
[[Category: Adenosylmethionine decarboxylase]]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: spermidine biosynthesis]]
[[Category: spermidine biosynthesis]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 13:23:50 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:04:52 2008''

Revision as of 10:04, 20 March 2008

Image:1jl0.jpg


PDB ID 1jl0

Drag the structure with the mouse to rotate
, resolution 1.50Å
Ligands: and
Activity: Adenosylmethionine decarboxylase, with EC number 4.1.1.50
Coordinates: save as pdb, mmCIF, xml



Structure of a Human S-Adenosylmethionine Decarboxylase Self-processing Ester Intermediate and Mechanism of Putrescine Stimulation of Processing as Revealed by the H243A Mutant


Contents

Overview

S-Adenosylmethionine decarboxylase (AdoMetDC) is synthesized as a proenzyme that cleaves itself in a putrescine-stimulated reaction via an N-->O acyl shift and beta-elimination to produce an active enzyme with a catalytically essential pyruvoyl residue at the new N-terminus. N-->O acyl shifts initiate the self-processing of other proteins such as inteins and amidohydrolases, but their mechanisms in such proteins are not well understood. We have solved the crystal structure of the H243A mutant of AdoMetDC to 1.5 A resolution. The mutant protein is trapped in the ester form, providing clear evidence for the structure of the ester intermediate in the processing of pyruvoyl enzymes. In addition, a putrescine molecule is bound in a charged region within the beta-sandwich, and cross-links the two beta-sheets through hydrogen bonds to several acidic residues and ordered water molecules. The high-resolution structure provides insight into the mechanism for the self-processing reaction and provides evidence for the mechanism for simulation of the self-processing reaction by putrescine. Studies of the effects of putrescine or 4-aminobutanol on the processing of mutant AdoMetDC proenzymes are consistent with a model in which a single activator molecule interacts with buried Asp174, Glu178, and Glu256, leading to an alteration in the position of Glu11, resulting in stimulation of self-processing.

Disease

Known disease associated with this structure: Acromesomelic dysplasia, Maroteaux type OMIM:[108961]

About this Structure

1JL0 is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Structure of a human S-adenosylmethionine decarboxylase self-processing ester intermediate and mechanism of putrescine stimulation of processing as revealed by the H243A mutant., Ekstrom JL, Tolbert WD, Xiong H, Pegg AE, Ealick SE, Biochemistry. 2001 Aug 14;40(32):9495-504. PMID:11583148

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