2ynj

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[[Image:2ynj.png|left|200px]]
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==GroEL at sub-nanometer resolution by Constrained Single Particle Tomography==
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<StructureSection load='2ynj' size='340' side='right' caption='[[2ynj]], [[Resolution|resolution]] 8.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2ynj]] is a 14 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_uti89 Escherichia coli uti89]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YNJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YNJ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TL:THALLIUM+(I)+ION'>TL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ynj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ynj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ynj RCSB], [http://www.ebi.ac.uk/pdbsum/2ynj PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cryo-electron microscopy (cryo-EM) is a powerful technique for 3D structure determination of protein complexes by averaging information from individual molecular images. The resolutions that can be achieved with single-particle cryo-EM are frequently limited by inaccuracies in assigning molecular orientations based solely on 2D projection images. Tomographic data collection schemes, however, provide powerful constraints that can be used to more accurately determine molecular orientations necessary for 3D reconstruction. Here, we propose "constrained single-particle tomography" as a general strategy for 3D structure determination in cryo-EM. A key component of our approach is the effective use of images recorded in tilt series to extract high-resolution information and correct for the contrast transfer function. By incorporating geometric constraints into the refinement to improve orientational accuracy of images, we reduce model bias and overrefinement artifacts and demonstrate that protein structures can be determined at resolutions of approximately 8 A starting from low-dose tomographic tilt series.
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{{STRUCTURE_2ynj| PDB=2ynj | SCENE= }}
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Protein secondary structure determination by constrained single-particle cryo-electron tomography.,Bartesaghi A, Lecumberry F, Sapiro G, Subramaniam S Structure. 2012 Dec 5;20(12):2003-13. doi: 10.1016/j.str.2012.10.016. PMID:23217682<ref>PMID:23217682</ref>
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===GroEL at sub-nanometer resolution by Constrained Single Particle Tomography===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_23217682}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[2ynj]] is a 14 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_uti89 Escherichia coli uti89]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YNJ OCA].
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</StructureSection>
[[Category: Escherichia coli uti89]]
[[Category: Escherichia coli uti89]]
[[Category: Bartesaghi, A.]]
[[Category: Bartesaghi, A.]]

Revision as of 11:53, 29 October 2014

GroEL at sub-nanometer resolution by Constrained Single Particle Tomography

2ynj, resolution 8.40Å

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