1kdm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1kdm.gif|left|200px]]<br /><applet load="1kdm" size="350" color="white" frame="true" align="right" spinBox="true"
+
[[Image:1kdm.gif|left|200px]]
-
caption="1kdm, resolution 2.35&Aring;" />
+
 
-
'''THE CRYSTAL STRUCTURE OF THE HUMAN SEX HORMONE-BINDING GLOBULIN (TETRAGONAL CRYSTAL FORM)'''<br />
+
{{Structure
 +
|PDB= 1kdm |SIZE=350|CAPTION= <scene name='initialview01'>1kdm</scene>, resolution 2.35&Aring;
 +
|SITE=
 +
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene> and <scene name='pdbligand=DHT:DIHYDROTESTOSTERONE'>DHT</scene>
 +
|ACTIVITY=
 +
|GENE=
 +
}}
 +
 
 +
'''THE CRYSTAL STRUCTURE OF THE HUMAN SEX HORMONE-BINDING GLOBULIN (TETRAGONAL CRYSTAL FORM)'''
 +
 
==Overview==
==Overview==
Line 7: Line 16:
==About this Structure==
==About this Structure==
-
1KDM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=DHT:'>DHT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KDM OCA].
+
1KDM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KDM OCA].
==Reference==
==Reference==
-
Resolution of a disordered region at the entrance of the human sex hormone-binding globulin steroid-binding site., Grishkovskaya I, Avvakumov GV, Hammond GL, Muller YA, J Mol Biol. 2002 May 3;318(3):621-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12054810 12054810]
+
Resolution of a disordered region at the entrance of the human sex hormone-binding globulin steroid-binding site., Grishkovskaya I, Avvakumov GV, Hammond GL, Muller YA, J Mol Biol. 2002 May 3;318(3):621-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12054810 12054810]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Single protein]]
Line 23: Line 32:
[[Category: tetragonal crystal form]]
[[Category: tetragonal crystal form]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 13:32:54 2008''
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:15:57 2008''

Revision as of 10:15, 20 March 2008

Image:1kdm.gif


PDB ID 1kdm

Drag the structure with the mouse to rotate
, resolution 2.35Å
Ligands: and
Coordinates: save as pdb, mmCIF, xml



THE CRYSTAL STRUCTURE OF THE HUMAN SEX HORMONE-BINDING GLOBULIN (TETRAGONAL CRYSTAL FORM)


Overview

The crystal structure of human sex hormone-binding globulin (SHBG) has revealed how 5alpha-dihydrotestosterone intercalates between the two seven-stranded beta-sheets of its amino-terminal laminin G-like domain. However, a region of disorder (residues 130 to 135 of SHBG) was identified together with a zinc-binding site in immediate proximity to the steroid. It has been important to resolve the structure of this region because previous studies have suggested that these residues may contribute to steroid binding directly. Here, we present the 2.35 A and 1.7 A crystal structures of the amino-terminal LG domain of SHBG obtained from a tetragonal crystal form and by EDTA-soaking of a trigonal crystal form, respectively. In both of these new structures, residues Pro130 to Arg135 are now clearly visible. Substitution of the two residues (Leu131Gly and Lys134Ala) pointing towards the steroid has shown that only Leu131 contributes significantly to steroid binding. Rather than covering the steroid-binding pocket in an extended conformation, a 3(10) helical turn is formed by residues Leu131 to Lys134 in this segment. Unfolding of this secondary structure element can either facilitate the entry of the steroids into the binding site or modulate the important contribution that Leu131 makes to steroid binding. A comparison with previous structures supports the concept that zinc binding re-orients the side-chain of His136, and this residue serves as a lever causing disorder within the loop structure between Pro130 and Arg135.

About this Structure

1KDM is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Resolution of a disordered region at the entrance of the human sex hormone-binding globulin steroid-binding site., Grishkovskaya I, Avvakumov GV, Hammond GL, Muller YA, J Mol Biol. 2002 May 3;318(3):621-6. PMID:12054810

Page seeded by OCA on Thu Mar 20 12:15:57 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1kdm"
Personal tools