This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cym

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3cym" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:3cym.png|left|200px]]
+
==Crystal structure of protein BAD_0989 from Bifidobacterium adolescentis==
-
 
+
<StructureSection load='3cym' size='340' side='right' caption='[[3cym]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
{{STRUCTURE_3cym| PDB=3cym | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3cym]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bifidobacterium_adolescentis_atcc_15703 Bifidobacterium adolescentis atcc 15703]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CYM FirstGlance]. <br>
-
===Crystal structure of protein BAD_0989 from Bifidobacterium adolescentis===
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
 
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAD_0989 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=367928 Bifidobacterium adolescentis ATCC 15703])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cym OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cym RCSB], [http://www.ebi.ac.uk/pdbsum/3cym PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3cym TOPSAN]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[3cym]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bifidobacterium_adolescentis_atcc_15703 Bifidobacterium adolescentis atcc 15703]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYM OCA].
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/3cym_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Bifidobacterium adolescentis atcc 15703]]
[[Category: Bifidobacterium adolescentis atcc 15703]]
[[Category: Almo, S C.]]
[[Category: Almo, S C.]]

Revision as of 09:27, 5 November 2014

Crystal structure of protein BAD_0989 from Bifidobacterium adolescentis

3cym, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools