3gpk
From Proteopedia
(Difference between revisions)
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| - | + | ==Crystal Structure of PpiC-type peptidyl-prolyl cis-trans isomerase domain at 1.55A resolution.== | |
| - | + | <StructureSection load='3gpk' size='340' side='right' caption='[[3gpk]], [[Resolution|resolution]] 1.55Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3gpk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans Novosphingobium aromaticivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GPK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GPK FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Saro_0888 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=48935 Novosphingobium aromaticivorans])</td></tr> | |
| - | == | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr> |
| - | [[3gpk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans Novosphingobium aromaticivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GPK OCA]. | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gpk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gpk RCSB], [http://www.ebi.ac.uk/pdbsum/3gpk PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gpk TOPSAN]</span></td></tr> |
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/3gpk_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Novosphingobium aromaticivorans]] | [[Category: Novosphingobium aromaticivorans]] | ||
[[Category: Peptidylprolyl isomerase]] | [[Category: Peptidylprolyl isomerase]] | ||
| - | [[Category: Burley, S K | + | [[Category: Burley, S K]] |
| - | [[Category: Eswaramoorthy, S | + | [[Category: Eswaramoorthy, S]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Satyanarayana, L | + | [[Category: Satyanarayana, L]] |
| - | [[Category: Swaminathan, S | + | [[Category: Swaminathan, S]] |
| - | + | ||
[[Category: Chaperone]] | [[Category: Chaperone]] | ||
[[Category: Isomerase]] | [[Category: Isomerase]] | ||
| - | [[Category: New | + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] |
| - | + | ||
[[Category: Peptidyl-prolyl cis-trans isomerase]] | [[Category: Peptidyl-prolyl cis-trans isomerase]] | ||
[[Category: Ppiase domain]] | [[Category: Ppiase domain]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
[[Category: Rotamase]] | [[Category: Rotamase]] | ||
| - | [[Category: Structural genomic]] | ||
Revision as of 12:55, 6 November 2014
Crystal Structure of PpiC-type peptidyl-prolyl cis-trans isomerase domain at 1.55A resolution.
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Categories: Novosphingobium aromaticivorans | Peptidylprolyl isomerase | Burley, S K | Eswaramoorthy, S | Structural genomic | Satyanarayana, L | Swaminathan, S | Chaperone | Isomerase | NYSGXRC, New York SGX Research Center for Structural Genomics | Peptidyl-prolyl cis-trans isomerase | Ppiase domain | PSI, Protein structure initiative | Rotamase
