This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2oog
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2oog]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_n315 Staphylococcus aureus subsp. aureus n315]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OOG FirstGlance]. <br> | <table><tr><td colspan='2'>[[2oog]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_n315 Staphylococcus aureus subsp. aureus n315]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OOG FirstGlance]. <br> | ||
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">glpQ, SA0820 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=158879 Staphylococcus aureus subsp. aureus N315])</td></tr> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">glpQ, SA0820 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=158879 Staphylococcus aureus subsp. aureus N315])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr> | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oog FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oog OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oog RCSB], [http://www.ebi.ac.uk/pdbsum/2oog PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2oog TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oog FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oog OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oog RCSB], [http://www.ebi.ac.uk/pdbsum/2oog PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2oog TOPSAN]</span></td></tr> |
| - | <table> | + | </table> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 25: | Line 25: | ||
[[Category: Glycerophosphodiester phosphodiesterase]] | [[Category: Glycerophosphodiester phosphodiesterase]] | ||
[[Category: Staphylococcus aureus subsp. aureus n315]] | [[Category: Staphylococcus aureus subsp. aureus n315]] | ||
| - | [[Category: Almo, S C | + | [[Category: Almo, S C]] |
| - | [[Category: Burley, S K | + | [[Category: Burley, S K]] |
| - | [[Category: Fedorov, E | + | [[Category: Fedorov, E]] |
| - | [[Category: Freeman, J | + | [[Category: Freeman, J]] |
| - | [[Category: Gheyi, T | + | [[Category: Gheyi, T]] |
| - | [[Category: Maletic, M | + | [[Category: Maletic, M]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Patskovsky, Y | + | [[Category: Patskovsky, Y]] |
| - | [[Category: Powell, A | + | [[Category: Powell, A]] |
| - | [[Category: Sauder, J M | + | [[Category: Sauder, J M]] |
| - | [[Category: Smith, D | + | [[Category: Smith, D]] |
| - | [[Category: Toro, R | + | [[Category: Toro, R]] |
| - | [[Category: Wasserman, S R | + | [[Category: Wasserman, S R]] |
[[Category: Glycerophosphoryl diester phosphodiesterase]] | [[Category: Glycerophosphoryl diester phosphodiesterase]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
| - | [[Category: New york sgx research center for structural genomic]] | ||
[[Category: Nysgrc]] | [[Category: Nysgrc]] | ||
| - | [[Category: | + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] |
[[Category: Phosphatase]] | [[Category: Phosphatase]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
Revision as of 13:00, 6 November 2014
Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus
| |||||||||||
Categories: Glycerophosphodiester phosphodiesterase | Staphylococcus aureus subsp. aureus n315 | Almo, S C | Burley, S K | Fedorov, E | Freeman, J | Gheyi, T | Maletic, M | Structural genomic | Patskovsky, Y | Powell, A | Sauder, J M | Smith, D | Toro, R | Wasserman, S R | Glycerophosphoryl diester phosphodiesterase | Hydrolase | Nysgrc | NYSGXRC, New York SGX Research Center for Structural Genomics | Phosphatase | PSI, Protein structure initiative
