This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3msr
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | + | ==The crystal structure of an amidohydrolase from Mycoplasma synoviae== | |
| - | + | <StructureSection load='3msr' size='340' side='right' caption='[[3msr]], [[Resolution|resolution]] 2.16Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[3msr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_synoviae Mycoplasma synoviae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MSR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MSR FirstGlance]. <br> |
| - | [[3msr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_synoviae Mycoplasma synoviae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MSR OCA]. | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HAD, MS53_0025 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2109 Mycoplasma synoviae])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3msr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3msr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3msr RCSB], [http://www.ebi.ac.uk/pdbsum/3msr PDBsum]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ms/3msr_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Mycoplasma synoviae]] | [[Category: Mycoplasma synoviae]] | ||
| - | [[Category: Burley, S K | + | [[Category: Burley, S K]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Swaminathan, S | + | [[Category: Swaminathan, S]] |
| - | [[Category: Zhang, Z | + | [[Category: Zhang, Z]] |
[[Category: Amidohydrolase]] | [[Category: Amidohydrolase]] | ||
[[Category: Had]] | [[Category: Had]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
| - | [[Category: New | + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] |
| - | + | [[Category: PSI, Protein structure initiative]] | |
| - | [[Category: Protein structure initiative | + | |
| - | + | ||
[[Category: Sgx]] | [[Category: Sgx]] | ||
| - | [[Category: Structural genomic]] | ||
Revision as of 13:18, 6 November 2014
The crystal structure of an amidohydrolase from Mycoplasma synoviae
| |||||||||||

