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Bacteriorhodopsin

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{{#tree:id=OrganizedByTopic|openlevels=0|
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===Bacteriorhodopsin===
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*Bacteriorhodopsin
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[[3ns0]], [[3nsb]], [[3mbv]], [[1x0s]], [[1x0i]], [[1x0k]], [[1xji]], [[1iw6]], [[4fpd]], [[2i1x]], [[1kme]], [[1qm8]], [[1bm1]], [[1brr]], [[2brd]], [[4hyx]]– HsBr residues 14-261 + lipid + retinal – ''Halobacterium salinarum''<br />
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**[[3ns0]], [[3nsb]], [[3mbv]], [[1x0s]], [[1x0i]], [[1x0k]], [[1xji]], [[1iw6]], [[4fpd]], [[2i1x]], [[1kme]], [[1qm8]], [[1bm1]], [[1brr]], [[2brd]], [[4hyx]]– HsBr residues 14-261 + lipid + retinal – ''Halobacterium salinarum''<br />
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[[3vhz]] - HsBr (mutant) + lipid + retinal<br />
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**[[3vhz]] - HsBr (mutant) + lipid + retinal<br />
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[[2wjk]], [[2wjl]] - HsBr residues 14-261 (mutant) + lipid + retinal<br />
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**[[2wjk]], [[2wjl]] - HsBr residues 14-261 (mutant) + lipid + retinal<br />
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[[3han]], [[2hao]], [[3hap]], [[3haq]], [[3har]], [[3has]], [[3coc]], [[3cod]], [[1tn5]], [[1tn0]], [[1s51]], [[1s52]], [[1s53]], [[1s54]], [[1q5i]], [[1q5j]], [[1pxr]], [[1pxs]], [[3hao]], [[3utv]], [[3utw]], [[3utx]], [[3uty]] - HsBr residues 14-261 (mutant) + retinal<br />
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**[[3han]], [[2hao]], [[3hap]], [[3haq]], [[3har]], [[3has]], [[3coc]], [[3cod]], [[1tn5]], [[1tn0]], [[1s51]], [[1s52]], [[1s53]], [[1s54]], [[1q5i]], [[1q5j]], [[1pxr]], [[1pxs]], [[3hao]], [[3utv]], [[3utw]], [[3utx]], [[3uty]] - HsBr residues 14-261 (mutant) + retinal<br />
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[[2ntu]], [[1py6]], [[1fbb]], [[1fbk]], [[1brx]], [[1ap9]], [[1at9]] - HsBr residues 14-261 + retinal<br />
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**[[2ntu]], [[1py6]], [[1fbb]], [[1fbk]], [[1brx]], [[1ap9]], [[1at9]] - HsBr residues 14-261 + retinal<br />
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[[2at9]] - HsBr residues 14-261 + lipid + retinal – Cryo EM<br />
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**[[2at9]] - HsBr residues 14-261 + lipid + retinal – Cryo EM<br />
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[[1brd]] - HsBr residues 14-261 + retinal – Cryo EM<br />
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**[[1brd]] - HsBr residues 14-261 + retinal – Cryo EM<br />
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[[1s8j]], [[3t45]] - HsBr residues 14-261 (mutant) + lipid + NO3 + retinal<br />
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**[[1s8j]], [[3t45]] - HsBr residues 14-261 (mutant) + lipid + NO3 + retinal<br />
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[[1mgy]] - HsBr residues 14-261 (mutant) + lipid + Br + retinal<br />
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**[[1mgy]] - HsBr residues 14-261 (mutant) + lipid + Br + retinal<br />
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[[1s8l]] - HsBr residues 14-261 (mutant) + lipid + retinal<br />
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**[[1s8l]] - HsBr residues 14-261 (mutant) + lipid + retinal<br />
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[[1qhj]] - HsBr residues 14-261 + phytanyl derivavative + retinal<br />
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**[[1qhj]] - HsBr residues 14-261 + phytanyl derivavative + retinal<br />
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[[4hwl]] – HsBr + heptane + hexane + retinal<br />
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**[[4hwl]] – HsBr + heptane + hexane + retinal<br />
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[[4hwl]] – HsBr + decane + hexane + tetradecane + octane + retinal<br />
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**[[4hwl]] – HsBr + decane + hexane + tetradecane + octane + retinal<br />
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[[1r84]], [[1r2n]] - HsBr residues 1-232 + retinal – NMR<BR />
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**[[1r84]], [[1r2n]] - HsBr residues 1-232 + retinal – NMR<BR />
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[[1bct]] - HsBr residues 163-231 – NMR<BR />
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**[[1bct]] - HsBr residues 163-231 – NMR<BR />
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[[1bha]], [[1bhb]] - HsBr residues 1-71 - NMR<BR />
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**[[1bha]], [[1bhb]] - HsBr residues 1-71 - NMR<BR />
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[[1l0m]] – Br (mutant) – ''Halobacterium halobium'' - NMR<BR />
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**[[1l0m]] – Br (mutant) – ''Halobacterium halobium'' - NMR<BR />
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===Bacteriorhodopsin intermediates===
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*Bacteriorhodopsin intermediates
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[[1f50]], [[1c8r]] - HsBr-BR residues 18-244 (mutant) + lipid + retinal<br />
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**[[1f50]], [[1c8r]] - HsBr-BR residues 18-244 (mutant) + lipid + retinal<br />
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[[1c3w]] - HsBr-BR residues 5-231 + lipid + retinal<br />
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**[[1c3w]] - HsBr-BR residues 5-231 + lipid + retinal<br />
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[[2zfe]] – HsBr-K residues 14-261 + lipid + retinal<br />
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**[[2zfe]] – HsBr-K residues 14-261 + lipid + retinal<br />
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[[1m0k]], [[1m0l]], [[1ixf]] - HsBr-K residues 1-261 + lipid + retinal<br />
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**[[1m0k]], [[1m0l]], [[1ixf]] - HsBr-K residues 1-261 + lipid + retinal<br />
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[[1m0m]] - HsBr-M1 residues 1-261 + lipid + retinal<br />
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**[[1m0m]] - HsBr-M1 residues 1-261 + lipid + retinal<br />
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[[1e0p]], [[2ntw]], [[1vjm]] - HsBr-L residues 18-245 + retinal<br />
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**[[1e0p]], [[2ntw]], [[1vjm]] - HsBr-L residues 18-245 + retinal<br />
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[[1ucq]], [[1iw9]], [[1o0a]] – HsBr-L residues 14-261 + lipid + retinal<br />
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**[[1ucq]], [[1iw9]], [[1o0a]] – HsBr-L residues 14-261 + lipid + retinal<br />
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[[1kg8]], [[1kg9]], [[1kgb]], [[1dze]], [[1cwq]], [[2zzl]], [[2i20]], [[2i21]], [[1p8h]] - HsBr-M residues 13-243 + lipid + retinal<br />
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**[[1kg8]], [[1kg9]], [[1kgb]], [[1dze]], [[1cwq]], [[2zzl]], [[2i20]], [[2i21]], [[1p8h]] - HsBr-M residues 13-243 + lipid + retinal<br />
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[[1f4z]], [[1c8s]], [[1p8i]] - HsBr-M residues 18-244 (mutant) + lipid + retinal<br />
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**[[1f4z]], [[1c8s]], [[1p8i]] - HsBr-M residues 18-244 (mutant) + lipid + retinal<br />
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[[1p8u]] – HsBr-N residues 14-261 (mutant) + lipid + retinal<br />
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**[[1p8u]] – HsBr-N residues 14-261 (mutant) + lipid + retinal<br />
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[[1jv6]], [[1jv7]], [[3vi0]] - HsBr-O residues 1-261 (mutant) + lipid + retinal<br />
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**[[1jv6]], [[1jv7]], [[3vi0]] - HsBr-O residues 1-261 (mutant) + lipid + retinal<br />
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[[1qko]], [[1qkp]] - HsBr residues 14-261 + retinal<br />
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**[[1qko]], [[1qkp]] - HsBr residues 14-261 + retinal<br />
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===Halorhodopsin===
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*Halorhodopsin
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[[3abw]], [[3a7k]], [[3vvk]] – NpBr+ N3 + bacterioruberin + detergent + retinal – ''Natronomonas pharaonis''<br />
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**[[3abw]], [[3a7k]], [[3vvk]] – NpBr+ N3 + bacterioruberin + detergent + retinal – ''Natronomonas pharaonis''<br />
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[[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]] - NpBr + bacterioruberin + detergent + retinal<br />
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**[[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]] - NpBr + bacterioruberin + detergent + retinal<br />
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[[2jaf]], [[2jag]], [[1e12]] - HsBr (mutant) + lipid+ retinal<br />
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**[[2jaf]], [[2jag]], [[1e12]] - HsBr (mutant) + lipid+ retinal<br />
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===Sensory rhodopsin II===
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*Sensory rhodopsin II
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[[2ksy]] – NpBr – NMR<BR />
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**[[2ksy]] – NpBr – NMR<BR />
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[[2f93]], [[2f95]], [[1h2s]] - BpBr + Br transducer + detergent + retinal<br />
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**[[2f93]], [[2f95]], [[1h2s]] - BpBr + Br transducer + detergent + retinal<br />
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[[3qap]], [[3qdc]] - NpBr + eicosane + lipid + retinal<br />
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**[[3qap]], [[3qdc]] - NpBr + eicosane + lipid + retinal<br />
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[[4gyc]] - NpBr + retinal + eicosane + lipid + Br transducer<br />
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**[[4gyc]] - NpBr + retinal + eicosane + lipid + Br transducer<br />
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[[1gu8]], [[1gue]], [[1h68]], [[1jgj]] - NpBr + retinal<br />
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**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]] - NpBr + retinal<br />
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[[1xio]] - Br + detergent + retinal - ''Anabaena''
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**[[1xio]] - Br + detergent + retinal - ''Anabaena''
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===Xanthorhodopsin===
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*Xanthorhodopsin
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[[3ddl]] – Br + detergent + salinixanthin + retinal – ''Salinibacter ruber''
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**[[3ddl]] – Br + detergent + salinixanthin + retinal – ''Salinibacter ruber''
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===Archaerhodopsin===
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*Archaerhodopsin
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[[2ei4]], [[2z55]] – HaBr + bacterioruberin + detergent + retinal – ''Halobacterium''<br />
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[[1vgo]] - HaBr + detergent + retinal<br />
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[[1uaz]] - HaBr + retinal<br />
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**[[2ei4]], [[2z55]] – HaBr + bacterioruberin + detergent + retinal – ''Halobacterium''<br />
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**[[1vgo]] - HaBr + detergent + retinal<br />
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**[[1uaz]] - HaBr + retinal<br />
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}}
==See Also==
==See Also==

Revision as of 11:19, 18 November 2014

Template:STRUCTURE 3han

Bacteriorhodopsin (Br) is a membrane protein in Archaea which moves protons across the cell membrane. Br is composed of 6 α-helical elements each containing a retinal molecule. The retinal changes its conformation upon binding of a proton, causing the Br to change conformation and pump the proton.

3D Structures of bacteriorhodopsin

Updated on 18-November-2014

See Also

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