4qam
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4qam]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QAM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QAM FirstGlance]. <br> | <table><tr><td colspan='2'>[[4qam]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QAM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QAM FirstGlance]. <br> | ||
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qam FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qam OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qam RCSB], [http://www.ebi.ac.uk/pdbsum/4qam PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qam FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qam OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qam RCSB], [http://www.ebi.ac.uk/pdbsum/4qam PDBsum]</span></td></tr> |
| - | <table> | + | </table> |
== Disease == | == Disease == | ||
[[http://www.uniprot.org/uniprot/RPGR_HUMAN RPGR_HUMAN]] Primary ciliary dyskinesia;Achromatopsia;Primary ciliary dyskinesia - retinitis pigmentosa;Cone rod dystrophy;Retinitis pigmentosa. Defects in RPGR are the cause of retinitis pigmentosa type 3 (RP3) [MIM:[http://omim.org/entry/300029 300029]]; also known as X-linked retinitis pigmentosa 3 (XLRP-3) or retinitis pigmentosa type 15 (RP15). A X-linked retinal dystrophy belonging to the group of pigmentary retinopathies. RP is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. In RP3, affected males have a severe phenotype, and carrier females show a wide spectrum of clinical features ranging from completely asymptomatic to severe retinitis pigmentosa. Heterozygous women can manifest a form of choroidoretinal degeneration which is distinguished from other types by the absence of visual defects in the presence of a brilliant, scintillating, golden-hued, patchy appearance most striking around the macula, called a tapetal-like retinal reflex.<ref>PMID:9990021</ref> <ref>PMID:8673101</ref> <ref>PMID:8817343</ref> <ref>PMID:10932196</ref> <ref>PMID:10970770</ref> <ref>PMID:9399904</ref> <ref>PMID:9855162</ref> <ref>PMID:10482958</ref> <ref>PMID:10737996</ref> <ref>PMID:10937588</ref> <ref>PMID:11180598</ref> <ref>PMID:11992260</ref> <ref>PMID:14564670</ref> <ref>PMID:12657579</ref> Defects in RPGR are the cause of retinitis pigmentosa and sinorespiratory infections with or without deafness (RPDSI) [MIM:[http://omim.org/entry/300455 300455]]. A disease characterized by the association primary ciliary dyskinesia features with retinitis pigmentosa. Some patients also manifest deafness.<ref>PMID:12920075</ref> <ref>PMID:14627685</ref> Defects in RPGR are the cause of cone-rod dystrophy X-linked type 1 (CORDX1) [MIM:[http://omim.org/entry/304020 304020]]; also known as cone dystrophy 1 (CO1). CORDs are inherited retinal dystrophies belonging to the group of pigmentary retinopathies. CORDs are characterized by retinal pigment deposits visible on fundus examination, predominantly in the macular region, and initial loss of cone photoreceptors followed by rod degeneration. This leads to decreased visual acuity and sensitivity in the central visual field, followed by loss of peripheral vision. Severe loss of vision occurs earlier than in retinitis pigmentosa. In CORDX1 the degree of rod-photoreceptor involvement can be variable, with degeneration increasing as the disease progresses. Affected individuals (essentially all of whom are males) present with decreased visual acuity, myopia, photophobia, abnormal color vision, full peripheral visual fields, decreased photopic electroretinographic responses, and granularity of the macular retinal pigment epithelium. Although penetrance appears to be nearly 100%, there is variable expressivity with respect to age at onset and severity of symptoms.<ref>PMID:11857109</ref> Defects in RPGR are a cause of macular degeneration X-linked atrophic (MDXLA) [MIM:[http://omim.org/entry/300834 300834]]. MDXLA is an ocular disorder characterized by macular atrophy causing progressive loss of visual acuity with minimal peripheral visual impairment. Some patients manifest extensive macular degeneration plus peripheral loss of retinal pigment epithelium and choriocapillaries. Full-field electroretinograms (ERGs) show normal cone and rod responses in some affected males despite advanced macular degeneration.<ref>PMID:12160730</ref> [[http://www.uniprot.org/uniprot/RPGR1_HUMAN RPGR1_HUMAN]] Leber congenital amaurosis;Meckel syndrome;Cone rod dystrophy. The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:11528500</ref> <ref>PMID:18682808</ref> The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:10958648</ref> <ref>PMID:12920076</ref> Heterozygous non-synonymous variants of RPGRIP1 may cause or increase the susceptibility to various forms of glaucoma, a genetically heterogeneous disorder. It is the second cause of blindness worldwide owing to the progressive degeneration of retinal ganglion neurons. | [[http://www.uniprot.org/uniprot/RPGR_HUMAN RPGR_HUMAN]] Primary ciliary dyskinesia;Achromatopsia;Primary ciliary dyskinesia - retinitis pigmentosa;Cone rod dystrophy;Retinitis pigmentosa. Defects in RPGR are the cause of retinitis pigmentosa type 3 (RP3) [MIM:[http://omim.org/entry/300029 300029]]; also known as X-linked retinitis pigmentosa 3 (XLRP-3) or retinitis pigmentosa type 15 (RP15). A X-linked retinal dystrophy belonging to the group of pigmentary retinopathies. RP is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. In RP3, affected males have a severe phenotype, and carrier females show a wide spectrum of clinical features ranging from completely asymptomatic to severe retinitis pigmentosa. Heterozygous women can manifest a form of choroidoretinal degeneration which is distinguished from other types by the absence of visual defects in the presence of a brilliant, scintillating, golden-hued, patchy appearance most striking around the macula, called a tapetal-like retinal reflex.<ref>PMID:9990021</ref> <ref>PMID:8673101</ref> <ref>PMID:8817343</ref> <ref>PMID:10932196</ref> <ref>PMID:10970770</ref> <ref>PMID:9399904</ref> <ref>PMID:9855162</ref> <ref>PMID:10482958</ref> <ref>PMID:10737996</ref> <ref>PMID:10937588</ref> <ref>PMID:11180598</ref> <ref>PMID:11992260</ref> <ref>PMID:14564670</ref> <ref>PMID:12657579</ref> Defects in RPGR are the cause of retinitis pigmentosa and sinorespiratory infections with or without deafness (RPDSI) [MIM:[http://omim.org/entry/300455 300455]]. A disease characterized by the association primary ciliary dyskinesia features with retinitis pigmentosa. Some patients also manifest deafness.<ref>PMID:12920075</ref> <ref>PMID:14627685</ref> Defects in RPGR are the cause of cone-rod dystrophy X-linked type 1 (CORDX1) [MIM:[http://omim.org/entry/304020 304020]]; also known as cone dystrophy 1 (CO1). CORDs are inherited retinal dystrophies belonging to the group of pigmentary retinopathies. CORDs are characterized by retinal pigment deposits visible on fundus examination, predominantly in the macular region, and initial loss of cone photoreceptors followed by rod degeneration. This leads to decreased visual acuity and sensitivity in the central visual field, followed by loss of peripheral vision. Severe loss of vision occurs earlier than in retinitis pigmentosa. In CORDX1 the degree of rod-photoreceptor involvement can be variable, with degeneration increasing as the disease progresses. Affected individuals (essentially all of whom are males) present with decreased visual acuity, myopia, photophobia, abnormal color vision, full peripheral visual fields, decreased photopic electroretinographic responses, and granularity of the macular retinal pigment epithelium. Although penetrance appears to be nearly 100%, there is variable expressivity with respect to age at onset and severity of symptoms.<ref>PMID:11857109</ref> Defects in RPGR are a cause of macular degeneration X-linked atrophic (MDXLA) [MIM:[http://omim.org/entry/300834 300834]]. MDXLA is an ocular disorder characterized by macular atrophy causing progressive loss of visual acuity with minimal peripheral visual impairment. Some patients manifest extensive macular degeneration plus peripheral loss of retinal pigment epithelium and choriocapillaries. Full-field electroretinograms (ERGs) show normal cone and rod responses in some affected males despite advanced macular degeneration.<ref>PMID:12160730</ref> [[http://www.uniprot.org/uniprot/RPGR1_HUMAN RPGR1_HUMAN]] Leber congenital amaurosis;Meckel syndrome;Cone rod dystrophy. The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:11528500</ref> <ref>PMID:18682808</ref> The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:10958648</ref> <ref>PMID:12920076</ref> Heterozygous non-synonymous variants of RPGRIP1 may cause or increase the susceptibility to various forms of glaucoma, a genetically heterogeneous disorder. It is the second cause of blindness worldwide owing to the progressive degeneration of retinal ganglion neurons. | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Buerger, M | + | [[Category: Buerger, M]] |
| - | [[Category: Remans, K | + | [[Category: Remans, K]] |
| - | [[Category: Vetter, I R | + | [[Category: Vetter, I R]] |
| - | [[Category: Wittinghofer, A | + | [[Category: Wittinghofer, A]] |
[[Category: Beta propeller]] | [[Category: Beta propeller]] | ||
[[Category: Signaling protein]] | [[Category: Signaling protein]] | ||
[[Category: Type ii c2 domain]] | [[Category: Type ii c2 domain]] | ||
Revision as of 10:46, 19 November 2014
Crystal Structure of the RPGR RCC1-like domain in complex with the RPGR-interacting domain of RPGRIP1
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