Elongation factor

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 9: Line 9:
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
 +
{{#tree:id=OrganizedByTopic|openlevels=0|
-
===EF-Tu===
+
*EF-Tu
-
[[1efm]], [[1efc]], [[1dg1]], [[2fx3]], [[1etu]] – EcEF – ''Escherichia coli''<BR />
+
**[[1efm]], [[1efc]], [[1dg1]], [[2fx3]], [[1etu]] – EcEF – ''Escherichia coli''<BR />
-
[[1qzd]] – EcEF – Cryo EM<BR />
+
**[[1qzd]] – EcEF – Cryo EM<BR />
-
[[3u2q]] – EcEF + drug<BR />
+
**[[3u2q]] – EcEF + drug<BR />
-
[[1mj1]] – EcEF + Phe-tRNA + S12 + S13 + L11 – Cryo EM<BR />
+
**[[1mj1]] – EcEF + Phe-tRNA + S12 + S13 + L11 – Cryo EM<BR />
-
[[3ep2]] - EcEF + tRNA + S12 + L11 + 16SRRNA + 23SRRNA – Cryo EM<BR />
+
**[[3ep2]] - EcEF + tRNA + S12 + L11 + 16SRRNA + 23SRRNA – Cryo EM<BR />
-
[[1ttt]], [[1ob5]] – TaEF + Phe-tRNA + GDPNP - ''Thermus aquaticus''<BR />
+
**[[1ttt]], [[1ob5]] – TaEF + Phe-tRNA + GDPNP - ''Thermus aquaticus''<BR />
-
[[1b23]] - TaEF + Cys-tRNA<BR />
+
**[[1b23]] - TaEF + Cys-tRNA<BR />
-
[[1ls2]] – yEF + Phe-tRNA – yeast – Cryo EM<BR />
+
**[[1ls2]] – yEF + Phe-tRNA – yeast – Cryo EM<BR />
-
[[3agj]] – EF + plethora protein – ''Aeropyrum pernix''<br />
+
**[[3agj]] – EF + plethora protein – ''Aeropyrum pernix''<br />
-
[[4h9g]], [[4lbv]], [[4lbw]], [[4lby]], [[4lbz]], [[4lc0]] – TtEF – ''Thermus thermophilus''<br />
+
**[[4h9g]], [[4lbv]], [[4lbw]], [[4lby]], [[4lbz]], [[4lc0]] – TtEF – ''Thermus thermophilus''<br />
-
[[4j0q]] – EF – ''Pseudomonas putida''<br />
+
**[[4j0q]] – EF – ''Pseudomonas putida''<br />
-
''EF-Tu complex with antibiotics''
+
*''EF-Tu complex with antibiotics''
-
[[1ob2]] - yEF + Phe-tRNA + antibiotic<BR />
+
**[[1ob2]] - yEF + Phe-tRNA + antibiotic<BR />
-
[[4abr]] - TtEF + antibiotic in 30S ribosome<BR />
+
**[[4abr]] - TtEF + antibiotic in 30S ribosome<BR />
-
[[1ha3]] - TtEF + antibiotic + GDP<BR />
+
**[[1ha3]] - TtEF + antibiotic + GDP<BR />
-
[[2c77]], [[2c78]] - TtEF + antibiotic + GTP analog<br />
+
**[[2c77]], [[2c78]] - TtEF + antibiotic + GTP analog<br />
-
[[3fic]], [[3fic]] – TtEF + antibiotic in 70S ribosome – Cryo EM<BR />
+
**[[3fic]], [[3fic]] – TtEF + antibiotic in 70S ribosome – Cryo EM<BR />
-
[[2bvn]] - EcEF + GDP<BR />NP + antibiotic<BR />
+
**[[2bvn]] - EcEF + GDP<BR />NP + antibiotic<BR />
-
[[1d8t]], [[2hcj]], [[2hdn]], [[3u6b]], [[3u6k]], [[4g5g]] – EcEF + antibiotic
+
**[[1d8t]], [[2hcj]], [[2hdn]], [[3u6b]], [[3u6k]], [[4g5g]] – EcEF + antibiotic
-
''EF-Tu complex with nucleotide''
+
*''EF-Tu complex with nucleotide''
-
[[1efu]] – EcEF + GDP<BR />
+
**[[1efu]] – EcEF + GDP<BR />
-
[[1exm]] – TtEF + GTP analog<br />
+
**[[1exm]] – TtEF + GTP analog<br />
-
[[1eft]] – TaEF + GNP – ''Thermus aquaticus''<BR />
+
**[[1eft]] – TaEF + GNP – ''Thermus aquaticus''<BR />
-
[[1tui]] – TaEF + GDP<BR />
+
**[[1tui]] – TaEF + GDP<BR />
-
[[1d2e]] – bEF + GDP – bovine<BR />
+
**[[1d2e]] – bEF + GDP – bovine<BR />
-
[[1jny]], [[1skq]] – SsEF + GDP – ''Sulfolobus solfataricus''
+
**[[1jny]], [[1skq]] – SsEF + GDP – ''Sulfolobus solfataricus''
-
''EF-Tu with EF-Ts''
+
*''EF-Tu with EF-Ts''
-
[[1efu]] – EcEF + EcEF-Ts<BR />
+
**[[1efu]] – EcEF + EcEF-Ts<BR />
-
[[1aip]] - TtEF + TtEF-Ts - ''Thermus thermophilus''<BR />
+
**[[1aip]] - TtEF + TtEF-Ts - ''Thermus thermophilus''<BR />
-
[[1xb2]] – bEF + EF-Ts - bovine<BR />
+
**[[1xb2]] – bEF + EF-Ts - bovine<BR />
-
[[1f60]] – yEF + EF-Ts C terminal<BR />
+
**[[1f60]] – yEF + EF-Ts C terminal<BR />
-
[[1g7c]] - yEF + EF-Ts C terminal + GDPNP<BR />
+
**[[1g7c]] - yEF + EF-Ts C terminal + GDPNP<BR />
-
[[1ije]], [[1ijf]] - yEF + EF-Ts C terminal + GDP<BR />
+
**[[1ije]], [[1ijf]] - yEF + EF-Ts C terminal + GDP<BR />
-
[[2b7b]] - yEF + EF-Ts C terminal (mutant) + GDP<BR />
+
**[[2b7b]] - yEF + EF-Ts C terminal (mutant) + GDP<BR />
-
[[2b7c]] - yEF + EF-Ts C terminal (mutant)
+
**[[2b7c]] - yEF + EF-Ts C terminal (mutant)
-
''EF-Tu in the ribosome''
+
*''EF-Tu in the ribosome''
-
[[3eq3]], [[3eq4]] – EcEF in 80S ribosome – Cryo EM<BR />
+
**[[3eq3]], [[3eq4]] – EcEF in 80S ribosome – Cryo EM<BR />
-
[[3izv]], [[3izw]], [[3fih]] - EcEF in 30S ribosome – Cryo EM<BR />
+
**[[3izv]], [[3izw]], [[3fih]] - EcEF in 30S ribosome – Cryo EM<BR />
-
[[1zc8]], [[3dwu]] – TtEF in 70S ribosome – Cryo EM<BR />
+
**[[1zc8]], [[3dwu]] – TtEF in 70S ribosome – Cryo EM<BR />
-
[[2wrn]], [[2wrq]], [[2xqd]], [[2y0u]], [[2y0w]], [[2y0y]], [[2y10]], [[2y12]], [[2y14]], [[2y16]], [[2y18]] - TtEF in 70S ribosome
+
**[[2wrn]], [[2wrq]], [[2xqd]], [[2y0u]], [[2y0w]], [[2y0y]], [[2y10]], [[2y12]], [[2y14]], [[2y16]], [[2y18]] - TtEF in 70S ribosome
-
===EF-SII===
+
*EF-SII
-
[[1tfi]] – hEF – human – NMR<BR />
+
**[[1tfi]] – hEF – human – NMR<BR />
-
[[3ndq]] - hEF domain II<BR />
+
**[[3ndq]] - hEF domain II<BR />
-
[[1enw]] – yEF domain II – NMR<BR />
+
**[[1enw]] – yEF domain II – NMR<BR />
-
[[1eo0]] - yEF domain I – NMR<BR />
+
**[[1eo0]] - yEF domain I – NMR<BR />
-
[[2xex]] – SaEF – ''Staphylococcus aureus''<BR />
+
**[[2xex]] – SaEF – ''Staphylococcus aureus''<BR />
-
[[1pqv]], [[1y1v]] – yEF + RNA polymerase II<BR />
+
**[[1pqv]], [[1y1v]] – yEF + RNA polymerase II<BR />
-
[[1y1y]], [[3gtm]] – yEF + RNA polymerase II + RNA<BR />
+
**[[1y1y]], [[3gtm]] – yEF + RNA polymerase II + RNA<BR />
-
[[1wjt]] – mEF N terminal – mouse – NMR<BR />
+
**[[1wjt]] – mEF N terminal – mouse – NMR<BR />
-
[[2m1h]] – EF PWWP domain – ''Trypanosoma brucei'' – NMR<br />
+
**[[2m1h]] – EF PWWP domain – ''Trypanosoma brucei'' – NMR<br />
-
===EF-ELL2===
+
*EF-ELL2
-
[[2e5n]] – hEF N2 domain - NMR<BR />
+
**[[2e5n]] – hEF N2 domain - NMR<BR />
-
===EF-G===
+
*EF-G
-
[[1efg]], [[1elo]], [[1ktv]], [[1wdt]], [[2dy1]] – TtEF<BR />
+
**[[1efg]], [[1elo]], [[1ktv]], [[1wdt]], [[2dy1]] – TtEF<BR />
-
[[1pn6]], [[3izp]] – TtEF – Cryo EM<BR />
+
**[[1pn6]], [[3izp]] – TtEF – Cryo EM<BR />
-
[[4b8f]], [[4b8h]] – TtEF in 70S ribosome <BR />
+
**[[4b8f]], [[4b8h]] – TtEF in 70S ribosome <BR />
-
[[4juw]], [[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]], [[4kdg]], [[4kdj]], [[4btc]] – TtEF in 30S ribosome <BR />
+
**[[4juw]], [[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]], [[4kdg]], [[4kdj]], [[4btc]] – TtEF in 30S ribosome <BR />
-
[[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] – EcEF in 30S ribosome <BR />
+
**[[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] – EcEF in 30S ribosome <BR />
-
[[3j5n]] – EcEF in 30S ribosome – Cryo-EM<BR />
+
**[[3j5n]] – EcEF in 30S ribosome – Cryo-EM<BR />
-
[[3j5x]] – EcEF in 30S ribosome + antibiotics – Cryo-EM<BR />
+
**[[3j5x]] – EcEF in 30S ribosome + antibiotics – Cryo-EM<BR />
-
[[1fnm]], [[2bm0]], [[2bm1]] – TtEF (mutant) <BR />
+
**[[1fnm]], [[2bm0]], [[2bm1]] – TtEF (mutant) <BR />
-
[[2bcw]] – TtEF + L11 + L7/L12 <br />
+
**[[2bcw]] – TtEF + L11 + L7/L12 <br />
-
[[2xex]] – SaEF<BR />
+
**[[2xex]] – SaEF<BR />
-
[[3zz0]], [[3zzt]], [[3zzu]] – SaEF (mutant) <BR />
+
**[[3zz0]], [[3zzt]], [[3zzu]] – SaEF (mutant) <BR />
-
[[2bv3]] - TtEF (mutant) + GTP analog<br />
+
**[[2bv3]] - TtEF (mutant) + GTP analog<br />
-
[[2j7k]] - TtEF (mutant) + GDP analog<br />
+
**[[2j7k]] - TtEF (mutant) + GDP analog<br />
-
[[2om7]], [[2wri]], [[2wrk]] – TtEF in 70S ribosome – Cryo EM<BR />
+
**[[2om7]], [[2wri]], [[2wrk]] – TtEF in 70S ribosome – Cryo EM<BR />
-
[[2xsy]], [[2xuy]] - TtEF in 70S ribosome<BR />
+
**[[2xsy]], [[2xuy]] - TtEF in 70S ribosome<BR />
-
[[1dar]], [[2efg]] – TtEF + GDP<BR />
+
**[[1dar]], [[2efg]] – TtEF + GDP<BR />
-
[[1jqm]], [[1jqs]] – EcEF + L11 – Cryo EM<BR />
+
**[[1jqm]], [[1jqs]] – EcEF + L11 – Cryo EM<BR />
-
[[1zn0]], [[2rdo]], [[3j0e]], [[3j18]] – EcEF in 30S ribosome – Cryo-EM<BR />
+
**[[1zn0]], [[2rdo]], [[3j0e]], [[3j18]] – EcEF in 30S ribosome – Cryo-EM<BR />
-
[[4fn5]] – PaEF - ''Pseudomonas aeruginosa''<br />
+
**[[4fn5]] – PaEF - ''Pseudomonas aeruginosa''<br />
-
===EF-GreA/GreB===
+
*EF-GreA/GreB
-
[[2pn0]] – EF – ''Nitrosomonas europaea''<BR />
+
**[[2pn0]] – EF – ''Nitrosomonas europaea''<BR />
-
[[2p4v]] – EcEF-GreB<br />
+
**[[2p4v]] – EcEF-GreB<br />
-
[[1grj]] – EcEF-GreA<br />
+
**[[1grj]] – EcEF-GreA<br />
-
===EF-NusA===
+
*EF-NusA
-
[[1wcl]], [[1wcn]] – EcEF C terminal – NMR<BR />
+
**[[1wcl]], [[1wcn]] – EcEF C terminal – NMR<BR />
-
[[2kwp]] - EcEF N terminal – NMR<BR />
+
**[[2kwp]] - EcEF N terminal – NMR<BR />
-
[[2jzb]] – EcEF + RNA polymerase subunit α - NMR<BR />
+
**[[2jzb]] – EcEF + RNA polymerase subunit α - NMR<BR />
-
===EF-P===
+
*EF-P
-
[[1ueb]] – TtEF<BR />
+
**[[1ueb]] – TtEF<BR />
-
[[3huw]], [[3huy]] – TtEF in 70S ribosome<BR />
+
**[[3huw]], [[3huy]] – TtEF in 70S ribosome<BR />
-
[[3oyy]] – PaEF <BR />
+
**[[3oyy]] – PaEF <BR />
-
[[3tre]] – EF – ''Coxiella burnetii''<br />
+
**[[3tre]] – EF – ''Coxiella burnetii''<br />
-
[[3a5z]] – EcEF + lysyl-tRNA synthetase
+
**[[3a5z]] – EcEF + lysyl-tRNA synthetase
-
===EF-Ts===
+
*EF-Ts
-
[[1tfe]] – TtEF<BR />
+
**[[1tfe]] – TtEF<BR />
-
[[1b64]] – hEF guanine exchange factor domain – NMR<BR />
+
**[[1b64]] – hEF guanine exchange factor domain – NMR<BR />
-
[[2cp9]] – UBA domain – NMR<BR />
+
**[[2cp9]] – UBA domain – NMR<BR />
-
[[1gh8]] – EF – ''Methanobacterium thermoautotrophicum'' – NMR<BR />
+
**[[1gh8]] – EF – ''Methanobacterium thermoautotrophicum'' – NMR<BR />
-
[[2yy3]] – EF – ''Pyrococcus horikoshii''<BR />
+
**[[2yy3]] – EF – ''Pyrococcus horikoshii''<BR />
-
[[2uz8]] – hEF (mutant)
+
**[[2uz8]] – hEF (mutant)
-
===EF-1G===
+
*EF-1G
-
[[1nhy]] – yEF N terminal
+
**[[1nhy]] – yEF N terminal
-
[[1pbu]] – hEF C terminal (mutant) - NMR<BR />
+
**[[1pbu]] – hEF C terminal (mutant) - NMR<BR />
-
===EF-2===
+
*EF-2
-
[[1n0v]] – yEF<BR />
+
**[[1n0v]] – yEF<BR />
-
[[1u2r]] – yEF + GDP<BR />
+
**[[1u2r]] – yEF + GDP<BR />
-
[[1n0u]], [[2e1r]], [[2npf]] – yEF + antifungal drug<BR />
+
**[[1n0u]], [[2e1r]], [[2npf]] – yEF + antifungal drug<BR />
-
[[1zm2]], [[1zm3]], [[1zm4]], [[1zm9]], [[3b78]], [[3b82]], [[3b8h]], [[2zit]] – yEF + exotoxin<BR />
+
**[[1zm2]], [[1zm3]], [[1zm4]], [[1zm9]], [[3b78]], [[3b82]], [[3b8h]], [[2zit]] – yEF + exotoxin<BR />
-
[[1s1h]] - yEF + antifungal drug in 40S ribosome – Cryo EM<BR />
+
**[[1s1h]] - yEF + antifungal drug in 40S ribosome – Cryo EM<BR />
-
[[3j38]] - DmEF in 40S ribosome – Cryo EM<BR />
+
**[[1s1h]] - hEF in 40S ribosome – Cryo EM<BR />
-
[[1s1h]] - hEF in 40S ribosome – Cryo EM<BR />
+
**[[2p8w]], [[2p8x]], [[3dny]] - yEF in 80S ribosome – Cryo EM<BR />
-
[[2p8w]], [[2p8x]], [[3dny]] - yEF in 80S ribosome – Cryo EM<BR />
+
**[[2p8y]], [[2p8z]] - yEF+ antifungal drug in 80S ribosome – Cryo EM<BR />
-
[[2p8y]], [[2p8z]] - yEF+ antifungal drug in 80S ribosome – Cryo EM<BR />
+
-
===EF-3===
+
*EF-3
-
[[2ix3]] – yEF<BR />
+
**[[2ix3]] – yEF<BR />
-
[[2iwh]] – yEF + ADPNP<BR />
+
**[[2iwh]] – yEF + ADPNP<BR />
-
[[2iw3]] – yEF + ADP<BR />
+
**[[2iw3]] – yEF + ADP<BR />
-
[[2ix8]] – yEF in 80S ribosome – Cryo EM<BR />
+
**[[2ix8]] – yEF in 80S ribosome – Cryo EM<BR />
-
===EF-SelB===
+
*EF-SelB
-
[[1lva]] – MtEF C terminal – ''Moorella thermoacetica''<BR />
+
**[[1lva]] – MtEF C terminal – ''Moorella thermoacetica''<BR />
-
[[2v9v]] – MtEF winged helix domain<BR />
+
**[[2v9v]] – MtEF winged helix domain<BR />
-
[[1wsu]], [[2uwm]] – MtEF + RNA<BR />
+
**[[1wsu]], [[2uwm]] – MtEF + RNA<BR />
-
[[2ply]] – MtEF (mutant) + RNA<BR />
+
**[[2ply]] – MtEF (mutant) + RNA<BR />
-
[[1wb2]], [[4aca]] – MmEF – ''Methanococcus maripaludis''<BR />
+
**[[1wb2]], [[4aca]] – MmEF – ''Methanococcus maripaludis''<BR />
-
[[1wb3]], [[4acb]] – MmEF + GTP analog<br />
+
**[[1wb3]], [[4acb]] – MmEF + GTP analog<br />
-
[[4ac9]], [[1wb1]] – MmEF + GDP<BR />
+
**[[4ac9]], [[1wb1]] – MmEF + GDP<BR />
-
[[2pjp]] – EcEF + RNA
+
**[[2pjp]] – EcEF + RNA
-
===EF-Spt5===
+
*EF-Spt5
-
[[2do3]], [[2e6z]], [[2e70]] – hEF KOW motif – NMR<BR />
+
**[[2do3]], [[2e6z]], [[2e70]] – hEF KOW motif – NMR<BR />
-
[[2exu]] – yEF<BR />
+
**[[2exu]] – yEF<BR />
-
[[3h7h]] – hEF + hEF-Spt4
+
**[[3h7h]] – hEF + hEF-Spt4
-
===EF-Spt6===
+
*EF-Spt6
-
[[3gxw]], [[3gxx]], [[3pjp]] – EF SH2 domain – ''Candida glabrata''<BR />
+
**[[3gxw]], [[3gxx]], [[3pjp]] – EF SH2 domain – ''Candida glabrata''<BR />
-
[[3psf]], [[3psi]] – yEF core domain<BR />
+
**[[3psf]], [[3psi]] – yEF core domain<BR />
-
[[3psj]], [[3psk]] – yEF SH2 domain<BR />
+
**[[3psj]], [[3psk]] – yEF SH2 domain<BR />
-
[[2l3t]] - yEF SH2 domain]] - NMR<BR />
+
**[[2l3t]] - yEF SH2 domain]] - NMR<BR />
-
[[3oak]] – yEF + transcription factor IWS1
+
**[[3oak]] – yEF + transcription factor IWS1
-
===EF-CA150===
+
*EF-CA150
-
 
+
-
[[2dod]], [[2doe]], [[2dof]], [[2e71]], [[2kiq]], [[2kis]] – hEF FF domain – NMR<BR />
+
-
[[3hfh]] – hEF FF domain<BR />
+
-
[[2ysi]]– mEF WW domain - NMR<BR />
+
 +
**[[2dod]], [[2doe]], [[2dof]], [[2e71]], [[2kiq]], [[2kis]] – hEF FF domain – NMR<BR />
 +
**[[3hfh]] – hEF FF domain<BR />
 +
**[[2ysi]]– mEF WW domain - NMR<BR />
 +
}}
</StructureSection>
</StructureSection>
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 10:21, 24 November 2014

Structure of EF-Tu (grey and pink) with EF-Ts (green and yellow) (PDB entry 1efu)

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman

Retrieved from "http://52.214.119.220/wiki/index.php/Elongation_factor"
Personal tools