This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Endonuclease

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 12: Line 12:
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
 +
{{#tree:id=OrganizedByTopic|openlevels=0|
-
===ENN-I===
+
*ENN-I
-
[[1bix]] - hENN – human<br />
+
**[[1bix]] - hENN – human<br />
-
[[1cfr]] – ENN – ''Citrobacter freundii''<br />
+
**[[1cfr]] – ENN – ''Citrobacter freundii''<br />
-
[[1af5]] - CrENN – ''Chlamydomonas reinhardtii''<br />
+
**[[1af5]] - CrENN – ''Chlamydomonas reinhardtii''<br />
-
[[1fzr]], [[1m0d]], [[1m0i]], [[3cae]] – T7ENN - Enterobacteria phage T7<br />
+
**[[1fzr]], [[1m0d]], [[1m0i]], [[3cae]] – T7ENN - Enterobacteria phage T7<br />
-
[[2g7e]], [[2g7f]] – VcENN – ''Vibrio cholera''<br />
+
**[[2g7e]], [[2g7f]] – VcENN – ''Vibrio cholera''<br />
-
[[2vnd]] - VcENN (mutant) <br />
+
**[[2vnd]] - VcENN (mutant) <br />
-
[[2pu3]] - VsENN – ''Vibrio salmonicida''
+
**[[2pu3]] - VsENN – ''Vibrio salmonicida''
-
===ENN-II===
+
*ENN-II
-
[[1pvi]], [[1pvu]] - ENN – ''Proteus vulgaris''<br />
+
**[[1pvi]], [[1pvu]] - ENN – ''Proteus vulgaris''<br />
-
[[2wsh]] - T4ENN (mutant) - Enterobacteria phage T4<br />
+
**[[2wsh]] - T4ENN (mutant) - Enterobacteria phage T4<br />
-
[[3w52]] – ENN – ''Arabidopsis thaliana''<br />
+
**[[3w52]] – ENN – ''Arabidopsis thaliana''<br />
-
===ENN-III===
+
*ENN-III
-
[[2abk]], [[1ako]] - EcENN – ''Escherichia coli''<br />
+
**[[2abk]], [[1ako]] - EcENN – ''Escherichia coli''<br />
-
[[1orn]], [[1orp]], [[1p59]] - GsENN + DNA – ''Geobacillus stearothermophilus''
+
**[[1orn]], [[1orp]], [[1p59]] - GsENN + DNA – ''Geobacillus stearothermophilus''
-
===ENN-IV===
+
*ENN-IV
-
[[1qtw]] - EcENN <br />
+
**[[1qtw]] - EcENN <br />
-
[[2nqh]] - EcENN (mutant) <br />
+
**[[2nqh]] - EcENN (mutant) <br />
-
[[1qum]] – EcENN + DNA<br />
+
**[[1qum]] – EcENN + DNA<br />
-
[[2nqj]], [[2nq9]], [[4k1g]] - EcENN (mutant) + DNA<br />
+
**[[2nqj]], [[2nq9]], [[4k1g]] - EcENN (mutant) + DNA<br />
-
[[1xp3]] - ENN – ''Bacillus anthracis''<br />
+
**[[1xp3]] - ENN – ''Bacillus anthracis''<br />
-
[[3aal]] - GkENN – ''Geobacillus kaustophilus''<br />
+
**[[3aal]] - GkENN – ''Geobacillus kaustophilus''<br />
-
[[3aam]] - TtENN – ''Thermus thermophilus''
+
**[[3aam]] - TtENN – ''Thermus thermophilus''
-
===ENN-V===
+
*ENN-V
-
[[1eni]], [[1enj]], [[1enk]], [[2end]] - T4ENN <br />
+
**[[1eni]], [[1enj]], [[1enk]], [[2end]] - T4ENN <br />
-
[[1vas]] - T4ENN + DNA<br />
+
**[[1vas]] - T4ENN + DNA<br />
-
[[2w35]], [[2w36]], [[4b20]] - TmENN + DNA – ''Thermotoga maritima''<br />
+
**[[2w35]], [[2w36]], [[4b20]] - TmENN + DNA – ''Thermotoga maritima''<br />
-
[[3hd0]] - TmENN <br />
+
**[[3hd0]] - TmENN <br />
-
[[3ga2]] - BsENN (mutant) – ''Bacillus subtilis''<br />
+
**[[3ga2]] - BsENN (mutant) – ''Bacillus subtilis''<br />
-
[[3goc]] - ENN – ''Streptomyces avermitilis''<br />
+
**[[3goc]] - ENN – ''Streptomyces avermitilis''<br />
-
[[2fcc]] – T4ENN + DNA<br />
+
**[[2fcc]] – T4ENN + DNA<br />
-
===ENN-VII===
+
*ENN-VII
-
[[1en7]], [[1e7d]] - T4ENN <br />
+
**[[1en7]], [[1e7d]] - T4ENN <br />
-
[[1e7l]] - T4ENN (mutant) <br />
+
**[[1e7l]] - T4ENN (mutant) <br />
-
[[2qnc]], [[2qnf]] - T4ENN (mutant) + DNA
+
**[[2qnc]], [[2qnf]] - T4ENN (mutant) + DNA
-
===ENN-VIII===
+
*ENN-VIII
-
[[1q39]], [[1q39]] - EcENN <br />
+
**[[1q39]], [[1q39]] - EcENN <br />
-
[[1q3b]], [[1q3c]] - EcENN (mutant) <br />
+
**[[1q3b]], [[1q3c]] - EcENN (mutant) <br />
-
[[1tdh]] – hENN <br />
+
**[[1tdh]] – hENN <br />
-
[[1bix]] – hENN + DNA<br />
+
**[[1bix]] – hENN + DNA<br />
-
[[1k3x]], [[2ea0]], [[1k3w]], [[1k3x]], [[2ea0]], [[2opf]], [[2oq4]] - EcENN + DNA <br />
+
**[[1k3x]], [[2ea0]], [[1k3w]], [[1k3x]], [[2ea0]], [[2opf]], [[2oq4]] - EcENN + DNA <br />
-
[[2opf]], [[2oq4]] - EcENN (mutant) + DNA
+
**[[2opf]], [[2oq4]] - EcENN (mutant) + DNA
-
===EcoKI ENN===
+
*EcoKI ENN
-
[[2ar0]] – EcENN (mutant)<br />
+
**[[2ar0]] – EcENN (mutant)<br />
-
===Ecoo109I ENN===
+
*Ecoo109I ENN
-
[[1wtd]] - EcENN<br />
+
**[[1wtd]] - EcENN<br />
-
[[1wte]] – EcENN + DNA<br />
+
**[[1wte]] – EcENN + DNA<br />
-
===EcoRI ENN===
+
*EcoRI ENN
-
[[1qc9]] - EcENN<br />
+
**[[1qc9]] - EcENN<br />
-
[[1eri]], [[1ckq]], [[1cl8]], [[1qps]] – EcENN + DNA<br />
+
**[[1eri]], [[1ckq]], [[1cl8]], [[1qps]] – EcENN + DNA<br />
-
[[1qrh]], [[1qri]], [[2oxv]] - EcENN (mutant) + DNA
+
**[[1qrh]], [[1qri]], [[2oxv]] - EcENN (mutant) + DNA
-
===EcoRII ENN===
+
*EcoRII ENN
-
[[1na6]] – EcENN<br />
+
**[[1na6]] – EcENN<br />
-
[[3hqf]], [[3hqg]] - EnENN + DNA
+
**[[3hqf]], [[3hqg]] - EnENN + DNA
-
===EcoRV ENN===
+
*EcoRV ENN
-
[[1rve]], [[1az3]] – EcENN<br />
+
**[[1rve]], [[1az3]] – EcENN<br />
-
[[1az4]] - EcENN (mutant) <br />
+
**[[1az4]] - EcENN (mutant) <br />
-
[[2rve]], [[4rve]], [[1rva]], [[1rvb]], [[1rvc]], [[1az0]], [[1bsu]], [[1bua]], [[1bgb]], [[1rv5]], [[1b94]], [[1b95]], [[1eo3]], [[1eo4]], [[1eon]], [[1eoo]], [[1eop]], [[2b0d]], [[2b0e]] - EcENN + DNA<br />
+
**[[2rve]], [[4rve]], [[1rva]], [[1rvb]], [[1rvc]], [[1az0]], [[1bsu]], [[1bua]], [[1bgb]], [[1rv5]], [[1b94]], [[1b95]], [[1eo3]], [[1eo4]], [[1eon]], [[1eoo]], [[1eop]], [[2b0d]], [[2b0e]] - EcENN + DNA<br />
-
[[1bss]], [[1b96]], [[1b97]], [[1stx]], [[1suz]], [[1sx5]], [[1sx8]], [[2ge5]] - EcENN (mutant) + DNA
+
**[[1bss]], [[1b96]], [[1b97]], [[1stx]], [[1suz]], [[1sx5]], [[1sx8]], [[2ge5]] - EcENN (mutant) + DNA
-
===BamHI ENN===
+
*BamHI ENN
-
[[1bam]] – BaENN – ''Bacillus amyloliquefaciens''<br />
+
**[[1bam]] – BaENN – ''Bacillus amyloliquefaciens''<br />
-
[[1bhm]], [[3bam]], [[2bam]], [[1esg]] - BaENN + DNA
+
**[[1bhm]], [[3bam]], [[2bam]], [[1esg]] - BaENN + DNA
-
===FokI ENN===
+
*FokI ENN
-
[[1fok]] – PoENN + DNA – ''Planomicrobium okeanokoites''<br />
+
**[[1fok]] – PoENN + DNA – ''Planomicrobium okeanokoites''<br />
-
[[2fok]] – PoENN
+
**[[2fok]] – PoENN
-
===PvuII ENN===
+
*PvuII ENN
-
[[3pvi]] - PvENN (mutant) + DNA – ''Proteus vulgaris''<br />
+
**[[3pvi]] - PvENN (mutant) + DNA – ''Proteus vulgaris''<br />
-
[[1k0z]], [[1h56]], [[3ksk]] - PvENN<br />
+
**[[1k0z]], [[1h56]], [[3ksk]] - PvENN<br />
-
[[1ni0]] - PvENN (mutant) <br />
+
**[[1ni0]] - PvENN (mutant) <br />
-
[[2pvi]], [[1eyu]], [[1f0o]] - PvENN + DNA
+
**[[2pvi]], [[1eyu]], [[1f0o]] - PvENN + DNA
-
===tRNA-splicing ENN===
+
*tRNA-splicing ENN
-
[[1a79]], [[1a76]], [[1a77]] - MjENN – ''Methanocaldococcus jannaschii''<br />
+
**[[1a79]], [[1a76]], [[1a77]] - MjENN – ''Methanocaldococcus jannaschii''<br />
-
[[2cv8]] - ENN – ''Sulfolobus tokodaii''<br />
+
**[[2cv8]] - ENN – ''Sulfolobus tokodaii''<br />
-
[[2gw6]] – hENN subunit sen15 – NMR<br />
+
**[[2gw6]] – hENN subunit sen15 – NMR<br />
-
[[2gjw]] - AfENN + RNA –'' Archaeoglobus fulgidus''<br />
+
**[[2gjw]] - AfENN + RNA –'' Archaeoglobus fulgidus''<br />
-
[[1r0v]], [[1r11]] – AfENN
+
**[[1r0v]], [[1r11]] – AfENN
-
[[2ohc]], [[2ohe]] - TaENN – ''Thermoplasma acidophilum''<br />
+
**[[2ohc]], [[2ohe]] - TaENN – ''Thermoplasma acidophilum''<br />
-
[[2zyz]] – ENN – ''Pyrobaculum aerophilum''<br />
+
**[[2zyz]] – ENN – ''Pyrobaculum aerophilum''<br />
-
[[3iey]] - ENN + NEQ261 – ''Nanoarchaeum equitans''<br />
+
**[[3iey]] - ENN + NEQ261 – ''Nanoarchaeum equitans''<br />
-
[[3ajv]] - ApENN (mutant) – ''Aeropyrum pernix''<br />
+
**[[3ajv]] - ApENN (mutant) – ''Aeropyrum pernix''<br />
-
[[3p1y]] - ApENN /AfENN<br />
+
**[[3p1y]] - ApENN /AfENN<br />
-
[[3p1z]] - ApENN + protein
+
**[[3p1z]] - ApENN + protein
-
===VSR ENN===
+
*VSR ENN
-
[[1vsr]] – EcENN<br />
+
**[[1vsr]] – EcENN<br />
-
[[1cw0]] - EcENN + DNA
+
**[[1cw0]] - EcENN + DNA
-
===BglI ENN===
+
*BglI ENN
-
[[1dmu]], [[1d2i]] – BsENN + DNA <br />
+
**[[1dmu]], [[1d2i]] – BsENN + DNA <br />
-
[[1dfm]] - BsENN (mutant) + DNA
+
**[[1dfm]] - BsENN (mutant) + DNA
-
===BglII ENN===
+
*BglII ENN
-
[[1es8]] - BsENN
+
**[[1es8]] - BsENN
-
===MunI ENN===
+
*MunI ENN
-
[[1d02]] - ENN (mutant) + DNA - ''Mycoplasma''
+
**[[1d02]] - ENN (mutant) + DNA - ''Mycoplasma''
-
===Sm ENN===
+
*Sm ENN
-
[[1smn]], [[1qae]], [[1ql0]], [[1g8t]] – ENN – ''Serratia marcescens''
+
**[[1smn]], [[1qae]], [[1ql0]], [[1g8t]] – ENN – ''Serratia marcescens''
-
===NaeI ENN===
+
*NaeI ENN
-
[[1ev7]] - LaENN – ''Lechevalieria aerocolonigenes''<br />
+
**[[1ev7]] - LaENN – ''Lechevalieria aerocolonigenes''<br />
-
[[1iaw]] - LaENN + DNA
+
**[[1iaw]] - LaENN + DNA
-
===NgoMIV ENN===
+
*NgoMIV ENN
-
[[1fiu]], [[4abt]] - ENN + DNA – ''Neisseria gonorrheae''
+
**[[1fiu]], [[4abt]] - ENN + DNA – ''Neisseria gonorrheae''
-
===NEI ENN===
+
*NEI ENN
-
[[1tdh]] - hENN
+
**[[1tdh]] - hENN
-
===BsoBI ENN===
+
*BsoBI ENN
-
[[1dc1]] - GsENN + DNA
+
**[[1dc1]] - GsENN + DNA
-
===Bse634I ENN===
+
*Bse634I ENN
-
[[1knv]] – GsENN<br />
+
**[[1knv]] – GsENN<br />
-
[[3v1z]] – GsENN + DNA<br />
+
**[[3v1z]] – GsENN + DNA<br />
-
[[3v20]], [[3v21]] - GsENN (mutant) + DNA
+
**[[3v20]], [[3v21]] - GsENN (mutant) + DNA
-
===HincII ENN===
+
*HincII ENN
-
[[1kc6]], [[1tw8]], [[1xhu]], [[1xhv]], [[1tx3]], [[2gie]] - HiENN + DNA – ''Haemophilus influenza''<br />
+
**[[1kc6]], [[1tw8]], [[1xhu]], [[1xhv]], [[1tx3]], [[2gie]] - HiENN + DNA – ''Haemophilus influenza''<br />
-
[[2gig]], [[2gih]], [[2gii]], [[2gij]], [[3e3y]], [[3e40]], [[3e41]], [[3e42]], [[3e43]], [[3e44]], [[3e45]], [[3ebc]] - HiENN (mutant) + DNA<br />
+
**[[2gig]], [[2gih]], [[2gii]], [[2gij]], [[3e3y]], [[3e40]], [[3e41]], [[3e42]], [[3e43]], [[3e44]], [[3e45]], [[3ebc]] - HiENN (mutant) + DNA<br />
-
[[2aud]] – HiENN
+
**[2aud]] – HiENN
-
===HinDIII ENN===
+
*HinDIII ENN
-
[[2e52]], [[3a4k]] - HiENN + DNA
+
**[[2e52]], [[3a4k]] - HiENN + DNA
-
===HinP1I ENN===
+
*HinP1I ENN
-
[[1ynm]] – HiENN<br />
+
**[[1ynm]] – HiENN<br />
-
[[2fkc]], [[2fkh]], [[2fl3]], [[2flc]] - HiENN + DNA
+
**[[2fkc]], [[2fkh]], [[2fl3]], [[2flc]] - HiENN + DNA
-
===Flap ENN===
+
*Flap ENN
-
[[1mc8]] - ENN (mutant) – ''Pyrococcus horikoshii''<br />
+
**[[1mc8]] - ENN (mutant) – ''Pyrococcus horikoshii''<br />
-
[[3ory]]– ENN – ''Desulfurococcus amylolyticus''<br />
+
**[[3ory]]– ENN – ''Desulfurococcus amylolyticus''<br />
-
[[3q8k]], [[3q8l]], [[3q8m]] - hENN + DNA<br />
+
**[[3q8k]], [[3q8l]], [[3q8m]] - hENN + DNA<br />
-
[[1rxv]], [[1rxw]] - AfENN + DNA<br />
+
**[[1rxv]], [[1rxw]] - AfENN + DNA<br />
-
[[1ul1]] - hENN + PCNA <br />
+
**[[1ul1]] - hENN + PCNA <br />
-
[[2izo]] - SsENN + PCNA – ''Sulfolobus solfataricus''<br />
+
**[[2izo]] - SsENN + PCNA – ''Sulfolobus solfataricus''<br />
-
[[1a76]], [[1a77]] - MjENN <br />
+
**[[1a76]], [[1a77]] - MjENN <br />
-
[[1b43]] – PfENN – ''Pyrococcus furiosus''<br />
+
**[[1b43]] – PfENN – ''Pyrococcus furiosus''<br />
-
[[1rxz]] - AfENN + PCNA <br />
+
**[[1rxz]] - AfENN + PCNA <br />
-
===DNA mismatch ENN===
+
*DNA mismatch ENN
-
[[1odg]] - EcENN + DNA<br />
+
**[[1odg]] - EcENN + DNA<br />
-
[[1h7u]] – hENN<br />
+
**[[1h7u]] – hENN<br />
-
===Vvn ENN===
+
*Vvn ENN
-
[[1ouo]] – VvENN – ''Vibrio vulnificus''<br />
+
**[[1ouo]] – VvENN – ''Vibrio vulnificus''<br />
-
[[1oup]], [[2ivk]] - VvENN + DNA
+
**[[1oup]], [[2ivk]] - VvENN + DNA
-
===BfiI ENN===
+
*BfiI ENN
-
[[2c1l]] – ENN – ''Bacillus firmus''
+
**[[2c1l]] – ENN – ''Bacillus firmus''
-
===SfiI ENN===
+
*SfiI ENN
-
[[2ezv]], [[2f03]] – ENN + DNA – synthetic
+
**[[2ezv]], [[2f03]] – ENN + DNA – synthetic
-
===Ecl18kI ENN===
+
*Ecl18kI ENN
-
[[2fqz]], [[2gb7]] – ENN + DNA – ''Enterobacter cloacae''
+
**[[2fqz]], [[2gb7]] – ENN + DNA – ''Enterobacter cloacae''
-
===SdaI ENN===
+
*SdaI ENN
-
[[2ixs]] – ENN – ''Streptomyces diastaticus''
+
**[[2ixs]] – ENN – ''Streptomyces diastaticus''
-
===PabI ENN===
+
*PabI ENN
-
[[2dvy]] – ENN – ''Pyrococcus abyssi''
+
**[[2dvy]] – ENN – ''Pyrococcus abyssi''
-
===PspGI ENN===
+
*PspGI ENN
-
[[3bm3]] – ENN – ''Pyrococcus''
+
**[[3bm3]] – ENN – ''Pyrococcus''
-
===NHN ENN===
+
*NHN ENN
-
[[2qgp]] – ENN – ''Geobacter metallireducens''
+
**[[2qgp]] – ENN – ''Geobacter metallireducens''
-
===UV damage ENN===
+
*UV damage ENN
-
[[2j6v]], [[3bzg]], [[3c0s]] – TtENN <br />
+
**[[2j6v]], [[3bzg]], [[3c0s]] – TtENN <br />
-
[[3bzj]], [[3c0l]], [[3c0q]] - TtENN (mutant)<br />
+
**[[3bzj]], [[3c0l]], [[3c0q]] - TtENN (mutant)<br />
-
[[4gle]] - SaENN + DNA<br />
+
**[[4gle]] - SaENN + DNA<br />
-
===NotI ENN===
+
*NotI ENN
-
[[3bvq]] - NoENN – ''Nocardia otitidiscaviarum''<br />
+
**[[3bvq]] - NoENN – ''Nocardia otitidiscaviarum''<br />
-
[[3c25]] - NoENN + DNA
+
**[[3c25]] - NoENN + DNA
-
===BpujI ENN===
+
*BpujI ENN
-
[[2vla]], [[3s1s]] – ENN – ''Bacillus pumilus''
+
**[[2vla]], [[3s1s]] – ENN – ''Bacillus pumilus''
-
===Sau3AI ENN===
+
*Sau3AI ENN
-
[[2reu]] – ENN C terminal – ''Staphylococcus aureus''
+
**[[2reu]] – ENN C terminal – ''Staphylococcus aureus''
-
===HpyI ENN===
+
*HpyI ENN
-
[[3fc3]], [[3gox – HpENN99 + DNA – ''Helicobacter pylori''<br />
+
**[[3fc3]], [[3gox – HpENN99 + DNA – ''Helicobacter pylori''<br />
-
[[3or3]] – HpENN88 + DNA
+
**[[3or3]] – HpENN88 + DNA
-
===PacI ENN===
+
*PacI ENN
-
[[3ldy]], [[3m7k]] - PaENN + DNA – ''Psdeudomonas alcaligenes''
+
**[[3ldy]], [[3m7k]] - PaENN + DNA – ''Psdeudomonas alcaligenes''
-
===Crossover junction ENN===
+
*Crossover junction ENN
-
[[2kpf]] - ENN – mouse
+
**[[2kpf]] - ENN – mouse
-
===OkrAI ENN===
+
*OkrAI ENN
-
[[3odh]] - ENN + DNA – ''Oceanobacter kriegii''
+
**[[3odh]] - ENN + DNA – ''Oceanobacter kriegii''
-
===BspD6I ENN===
+
*BspD6I ENN
-
[[2ewf]] - ENN – ''Bacillus''
+
**[[2ewf]] - ENN – ''Bacillus''
-
===ThaI ENN===
+
*ThaI ENN
-
[[3ndh]] - TaENN + DNA
+
**[[3ndh]] - TaENN + DNA
-
===Xpf ENN===
+
*Xpf ENN
-
[[1z00]], [[2a1j]] - hENN C terminal + DNA excision repair protein<br />
+
**[[1z00]], [[2a1j]] - hENN C terminal + DNA excision repair protein<br />
-
[[2bgw]] - ApENN + DNA <br />
+
**[[2bgw]] - ApENN + DNA <br />
-
[[2bhn]] - ApENN <br />
+
**[[2bhn]] - ApENN <br />
-
==Intron-encoded endonuclease==
+
*'''Intron-encoded endonuclease'''
-
===I-PpoI ENN===
+
*I-PpoI ENN
-
[[1a74]], [[1ipp]], [[1a73]], [[1cz0]] - PpENN + DNA – ''Physarum polycephalum''<br />
+
**[[1a74]], [[1ipp]], [[1a73]], [[1cz0]] - PpENN + DNA – ''Physarum polycephalum''<br />
-
[[1cyq]], [[1evw]], [[2o6m]] - PpENN (mutant) + DNA<br />
+
**[[1cyq]], [[1evw]], [[2o6m]] - PpENN (mutant) + DNA<br />
-
[[1evx]] - PpENN
+
**[[1evx]] - PpENN
-
===I-CreI ENN===
+
*I-CreI ENN
-
[[1bp7]], [[1g9y]], [[1g9z]], [[1n3e]], [[1n3f]], [[2vbj]], [[2vbl]], [[2vbn]], [[2vbo]], [[4aqu]], [[4aqx]] - CrENN + DNA <br />
+
**[[1bp7]], [[1g9y]], [[1g9z]], [[1n3e]], [[1n3f]], [[2vbj]], [[2vbl]], [[2vbn]], [[2vbo]], [[4aqu]], [[4aqx]] - CrENN + DNA <br />
-
[[1u0c]], [[1u0d]], [[1t9i]], [[1t9j]], [[2i3p]], [[2i3q]], [[4aab]], [[4aad]], [[4aae]], [[4aaf]], [[4aag]] - CrENN (mutant) + DNA<br />
+
**[[1u0c]], [[1u0d]], [[1t9i]], [[1t9j]], [[2i3p]], [[2i3q]], [[4aab]], [[4aad]], [[4aae]], [[4aaf]], [[4aag]] - CrENN (mutant) + DNA<br />
-
[[2o7m]] - CrENN
+
**[[2o7m]] - CrENN
-
===I-CeuI ENN===
+
*I-CeuI ENN
-
[[2ex5]] - ENN (mutant) + DNA – ''Chlamydomonas eugametos''
+
**[[2ex5]] - ENN (mutant) + DNA – ''Chlamydomonas eugametos''
-
===I-DmoI ENN===
+
*I-DmoI ENN
-
[[1b24]], [[2vs7]], [[2vs8]] - DmENN + DNA – ''Desulfurococcus mobilis''<br />
+
**[[1b24]], [[2vs7]], [[2vs8]] - DmENN + DNA – ''Desulfurococcus mobilis''<br />
-
[[1mow]] – DmENN/CrENN + DNA
+
**[[1mow]] – DmENN/CrENN + DNA
-
===I-AniI ENN===
+
*I-AniI ENN
-
[[1p8k]], [[2qoj]], [[3uvf]] - EnENN + DNA – ''Emericella nidulans''<br />
+
**[[1p8k]], [[2qoj]], [[3uvf]] - EnENN + DNA – ''Emericella nidulans''<br />
-
[[3eh8]] - EnENN (mutant) + DNA
+
**[[3eh8]] - EnENN (mutant) + DNA
-
===I-HmuI ENN===
+
*I-HmuI ENN
-
[[1u3e]] - ENN + DNA – Bacillus phage spo1
+
**[[1u3e]] - ENN + DNA – Bacillus phage spo1
-
===I-TevI ENN===
+
*I-TevI ENN
-
[[1i3j]], [[1t2t]] - T4ENN + DNA<br />
+
**[[1i3j]], [[1t2t]] - T4ENN + DNA<br />
-
[[1ln0]], [[1mk0]] – T4ENN (mutant)
+
**[[1ln0]], [[1mk0]] – T4ENN (mutant)
-
===I-SceI ENN===
+
*I-SceI ENN
-
[[1dfa]], [[1ef0]] – yENN – yeast<br />
+
**[[1dfa]], [[1ef0]] – yENN – yeast<br />
-
[[1gpp]] – yENN (mutant) <br />
+
**[[1gpp]] – yENN (mutant) <br />
-
[[1lws]], [[1lwt]], [[1r7m]], [[3c0w]], [[3c0x]], [[3ool]] - yENN + DNA<br />
+
**[[1lws]], [[1lwt]], [[1r7m]], [[3c0w]], [[3c0x]], [[3ool]] - yENN + DNA<br />
-
[[3oor]] - yENN (mutant) + DNA
+
**[[3oor]] - yENN (mutant) + DNA
-
===I-PkoII ENN===
+
*I-PkoII ENN
-
[[2cw7]], [[2cw8]] – ENN – ''Thermococcus kodakarensis''
+
**[[2cw7]], [[2cw8]] – ENN – ''Thermococcus kodakarensis''
-
===I-MspI ENN===
+
*I-MspI ENN
-
[[1sa3]], [[1yfi]], [[2fld]] – ENN + DNA – ''Moraxella''
+
**[[1sa3]], [[1yfi]], [[2fld]] – ENN + DNA – ''Moraxella''
-
===I-PfuI ENN===
+
*I-PfuI ENN
-
[[1dq3]] – PfENN
+
**[[1dq3]] – PfENN
-
===I-Tsp061I ENN===
+
*I-Tsp061I ENN
-
[[2dch]] – ENN – ''Thermoproteus''
+
**[[2dch]] – ENN – ''Thermoproteus''
-
===I-Vdi141I ENN===
+
*I-Vdi141I ENN
-
[[3e54]] – ENN – ''Vulcanisaeta distribute''
+
**[[3e54]] – ENN – ''Vulcanisaeta distribute''
-
===I-MtuI ENN===
+
*I-MtuI ENN
-
[[3ifj]], [[3igd]] - MtENN (mutant) – ''Mycobacterium tuberculosis''<br />
+
**[[3ifj]], [[3igd]] - MtENN (mutant) – ''Mycobacterium tuberculosis''<br />
-
[[2l8l]] - MtENN
+
**[[2l8l]] - MtENN
-
===I-MsoI ENN===
+
*I-MsoI ENN
-
[[1m5x]], [[3fd2]] – MoENN + DNA – ''Monomastix''<br />
+
**[[1m5x]], [[3fd2]] – MoENN + DNA – ''Monomastix''<br />
-
[[3ko2]] – MoENN (mutant) + DNA
+
**[[3ko2]] – MoENN (mutant) + DNA
-
===I-GzeMII ENN===
+
*I-GzeMII ENN
-
[[4efj]] – ENN + DNA – ''Gibberella zeae''
+
**[[4efj]] – ENN + DNA – ''Gibberella zeae''
-
===I-tRNA ENN===
+
*I-tRNA ENN
-
 
+
-
[[4fz2]] – MoENN – ''Candidatus micrarchaeum''<br />
+
 +
**[[4fz2]] – MoENN – ''Candidatus micrarchaeum''<br />
 +
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 10:45, 24 November 2014

Template:STRUCTURE 1rva Endonuclease (ENN) cleaves phosphodiester bond within polynucleotide chain. ENN cleaves DNA at a restriction site which is usually a 6-nucleotide palindrome. ENN is restriction site–specific. Various types of ENN differ by their mechanism of action. ENN is used in genetic engineering to make recombinant DNA. ENN requires a restriction site and a cleavage pattern. ENN-I operates on DNA with separate restriction site and cleavage pattern, while ENN-II operates on overlapping restriction site and cleavage pattern. Some ENNs are encoded within introns thus facilitating their mobility. These ENNs or inteins are designated I-ENN. See also

3D structures of endonuclease

Updated on 24-November-2014 {{#tree:id=OrganizedByTopic|openlevels=0|

  • ENN-I
    • 1bix - hENN – human
    • 1cfr – ENN – Citrobacter freundii
    • 1af5 - CrENN – Chlamydomonas reinhardtii
    • 1fzr, 1m0d, 1m0i, 3cae – T7ENN - Enterobacteria phage T7
    • 2g7e, 2g7f – VcENN – Vibrio cholera
    • 2vnd - VcENN (mutant)
    • 2pu3 - VsENN – Vibrio salmonicida
  • ENN-II
    • 1pvi, 1pvu - ENN – Proteus vulgaris
    • 2wsh - T4ENN (mutant) - Enterobacteria phage T4
    • 3w52 – ENN – Arabidopsis thaliana
  • ENN-III
    • 2abk, 1ako - EcENN – Escherichia coli
    • 1orn, 1orp, 1p59 - GsENN + DNA – Geobacillus stearothermophilus
  • ENN-IV
    • 1qtw - EcENN
    • 2nqh - EcENN (mutant)
    • 1qum – EcENN + DNA
    • 2nqj, 2nq9, 4k1g - EcENN (mutant) + DNA
    • 1xp3 - ENN – Bacillus anthracis
    • 3aal - GkENN – Geobacillus kaustophilus
    • 3aam - TtENN – Thermus thermophilus
  • ENN-V
  • ENN-VII
  • ENN-VIII
  • EcoKI ENN
    • 2ar0 – EcENN (mutant)
  • Ecoo109I ENN
  • EcoRI ENN
  • EcoRII ENN
  • EcoRV ENN
  • BamHI ENN
  • FokI ENN
    • 1fok – PoENN + DNA – Planomicrobium okeanokoites
    • 2fok – PoENN
  • PvuII ENN
  • tRNA-splicing ENN
    • 1a79, 1a76, 1a77 - MjENN – Methanocaldococcus jannaschii
    • 2cv8 - ENN – Sulfolobus tokodaii
    • 2gw6 – hENN subunit sen15 – NMR
    • 2gjw - AfENN + RNA – Archaeoglobus fulgidus
    • 1r0v, 1r11 – AfENN
    • 2ohc, 2ohe - TaENN – Thermoplasma acidophilum
    • 2zyz – ENN – Pyrobaculum aerophilum
    • 3iey - ENN + NEQ261 – Nanoarchaeum equitans
    • 3ajv - ApENN (mutant) – Aeropyrum pernix
    • 3p1y - ApENN /AfENN
    • 3p1z - ApENN + protein
  • VSR ENN
  • BglI ENN
  • BglII ENN
  • MunI ENN
    • 1d02 - ENN (mutant) + DNA - Mycoplasma
  • Sm ENN
  • NaeI ENN
    • 1ev7 - LaENN – Lechevalieria aerocolonigenes
    • 1iaw - LaENN + DNA
  • NgoMIV ENN
    • 1fiu, 4abt - ENN + DNA – Neisseria gonorrheae
  • NEI ENN
  • BsoBI ENN
  • Bse634I ENN
  • HincII ENN
  • HinDIII ENN
  • HinP1I ENN
  • Flap ENN
    • 1mc8 - ENN (mutant) – Pyrococcus horikoshii
    • 3ory– ENN – Desulfurococcus amylolyticus
    • 3q8k, 3q8l, 3q8m - hENN + DNA
    • 1rxv, 1rxw - AfENN + DNA
    • 1ul1 - hENN + PCNA
    • 2izo - SsENN + PCNA – Sulfolobus solfataricus
    • 1a76, 1a77 - MjENN
    • 1b43 – PfENN – Pyrococcus furiosus
    • 1rxz - AfENN + PCNA
  • DNA mismatch ENN
  • Vvn ENN
    • 1ouo – VvENN – Vibrio vulnificus
    • 1oup, 2ivk - VvENN + DNA
  • BfiI ENN
    • 2c1l – ENN – Bacillus firmus
  • SfiI ENN
  • Ecl18kI ENN
    • 2fqz, 2gb7 – ENN + DNA – Enterobacter cloacae
  • SdaI ENN
    • 2ixs – ENN – Streptomyces diastaticus
  • PabI ENN
    • 2dvy – ENN – Pyrococcus abyssi
  • PspGI ENN
    • 3bm3 – ENN – Pyrococcus
  • NHN ENN
    • 2qgp – ENN – Geobacter metallireducens
  • UV damage ENN
  • NotI ENN
    • 3bvq - NoENN – Nocardia otitidiscaviarum
    • 3c25 - NoENN + DNA
  • BpujI ENN
    • 2vla, 3s1s – ENN – Bacillus pumilus
  • Sau3AI ENN
    • 2reu – ENN C terminal – Staphylococcus aureus
  • HpyI ENN
    • 3fc3, [[3gox – HpENN99 + DNA – Helicobacter pylori
    • 3or3 – HpENN88 + DNA
  • PacI ENN
    • 3ldy, 3m7k - PaENN + DNA – Psdeudomonas alcaligenes
  • Crossover junction ENN
    • 2kpf - ENN – mouse
  • OkrAI ENN
    • 3odh - ENN + DNA – Oceanobacter kriegii
  • BspD6I ENN
    • 2ewf - ENN – Bacillus
  • ThaI ENN
  • Xpf ENN
    • 1z00, 2a1j - hENN C terminal + DNA excision repair protein
    • 2bgw - ApENN + DNA
    • 2bhn - ApENN
  • Intron-encoded endonuclease
  • I-PpoI ENN
  • I-CreI ENN
  • I-CeuI ENN
    • 2ex5 - ENN (mutant) + DNA – Chlamydomonas eugametos
  • I-DmoI ENN
    • 1b24, 2vs7, 2vs8 - DmENN + DNA – Desulfurococcus mobilis
    • 1mow – DmENN/CrENN + DNA
  • I-AniI ENN
    • 1p8k, 2qoj, 3uvf - EnENN + DNA – Emericella nidulans
    • 3eh8 - EnENN (mutant) + DNA
  • I-HmuI ENN
    • 1u3e - ENN + DNA – Bacillus phage spo1
  • I-TevI ENN
  • I-SceI ENN
  • I-PkoII ENN
    • 2cw7, 2cw8 – ENN – Thermococcus kodakarensis
  • I-MspI ENN
  • I-PfuI ENN
  • I-Tsp061I ENN
    • 2dch – ENN – Thermoproteus
  • I-Vdi141I ENN
    • 3e54 – ENN – Vulcanisaeta distribute
  • I-MtuI ENN
    • 3ifj, 3igd - MtENN (mutant) – Mycobacterium tuberculosis
    • 2l8l - MtENN
  • I-MsoI ENN
    • 1m5x, 3fd2 – MoENN + DNA – Monomastix
    • 3ko2 – MoENN (mutant) + DNA
  • I-GzeMII ENN
    • 4efj – ENN + DNA – Gibberella zeae
  • I-tRNA ENN
    • 4fz2 – MoENN – Candidatus micrarchaeum

}}

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman

Retrieved from "http://52.214.119.220/wiki/index.php/Endonuclease"
Personal tools