1lvo
From Proteopedia
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| - | [[Image:1lvo.jpg|left|200px]] | + | [[Image:1lvo.jpg|left|200px]] |
| - | + | ||
| - | '''Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain''' | + | {{Structure |
| + | |PDB= 1lvo |SIZE=350|CAPTION= <scene name='initialview01'>1lvo</scene>, resolution 1.96Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=DIO:1,4-DIETHYLENE+DIOXIDE'>DIO</scene> and <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= ORF1a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11149 Transmissible gastroenteritis virus]) | ||
| + | }} | ||
| + | |||
| + | '''Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1LVO is a [ | + | 1LVO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Transmissible_gastroenteritis_virus Transmissible gastroenteritis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LVO OCA]. |
==Reference== | ==Reference== | ||
| - | Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain., Anand K, Palm GJ, Mesters JR, Siddell SG, Ziebuhr J, Hilgenfeld R, EMBO J. 2002 Jul 1;21(13):3213-24. PMID:[http:// | + | Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain., Anand K, Palm GJ, Mesters JR, Siddell SG, Ziebuhr J, Hilgenfeld R, EMBO J. 2002 Jul 1;21(13):3213-24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12093723 12093723] |
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Transmissible gastroenteritis virus]] | [[Category: Transmissible gastroenteritis virus]] | ||
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[[Category: proteinase]] | [[Category: proteinase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:35:47 2008'' |
Revision as of 10:35, 20 March 2008
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| , resolution 1.96Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , and | ||||||
| Gene: | ORF1a (Transmissible gastroenteritis virus) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain
Overview
The key enzyme in coronavirus polyprotein processing is the viral main proteinase, M(pro), a protein with extremely low sequence similarity to other viral and cellular proteinases. Here, the crystal structure of the 33.1 kDa transmissible gastroenteritis (corona)virus M(pro) is reported. The structure was refined to 1.96 A resolution and revealed three dimers in the asymmetric unit. The mutual arrangement of the protomers in each of the dimers suggests that M(pro) self-processing occurs in trans. The active site, comprised of Cys144 and His41, is part of a chymotrypsin-like fold that is connected by a 16 residue loop to an extra domain featuring a novel alpha-helical fold. Molecular modelling and mutagenesis data implicate the loop in substrate binding and elucidate S1 and S2 subsites suitable to accommodate the side chains of the P1 glutamine and P2 leucine residues of M(pro) substrates. Interactions involving the N-terminus and the alpha-helical domain stabilize the loop in the orientation required for trans-cleavage activity. The study illustrates that RNA viruses have evolved unprecedented variations of the classical chymotrypsin fold.
About this Structure
1LVO is a Single protein structure of sequence from Transmissible gastroenteritis virus. Full crystallographic information is available from OCA.
Reference
Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain., Anand K, Palm GJ, Mesters JR, Siddell SG, Ziebuhr J, Hilgenfeld R, EMBO J. 2002 Jul 1;21(13):3213-24. PMID:12093723
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