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3f4n
From Proteopedia
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| - | + | ==Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein PdxJ from Yersinia pestis== | |
| - | + | <StructureSection load='3f4n' size='340' side='right' caption='[[3f4n]], [[Resolution|resolution]] 2.40Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3f4n]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3F4N FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PXP:PYRIDOXINE-5-PHOSPHATE'>PXP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pdxJ, y1300, YPO2930, YP_2525 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 Yersinia pestis])</td></tr> | |
| - | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyridoxine_5'-phosphate_synthase Pyridoxine 5'-phosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.99.2 2.6.99.2] </span></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f4n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3f4n RCSB], [http://www.ebi.ac.uk/pdbsum/3f4n PDBsum], [http://www.topsan.org/Proteins/CSGID/3f4n TOPSAN]</span></td></tr> |
| - | [[3f4n]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4N OCA]. | + | </table> |
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f4/3f4n_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Pyridoxine 5'-phosphate synthase]] | [[Category: Pyridoxine 5'-phosphate synthase]] | ||
[[Category: Yersinia pestis]] | [[Category: Yersinia pestis]] | ||
| - | [[Category: Anderson, W F | + | [[Category: Anderson, W F]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Joachimiak, A | + | [[Category: Joachimiak, A]] |
| - | [[Category: Kim, Y | + | [[Category: Kim, Y]] |
| - | [[Category: Maltseva, N | + | [[Category: Maltseva, N]] |
| - | [[Category: Stam, J | + | [[Category: Stam, J]] |
[[Category: Biosynthetic protein]] | [[Category: Biosynthetic protein]] | ||
| - | [[Category: Center for structural genomics of infectious disease]] | ||
[[Category: Csgid]] | [[Category: Csgid]] | ||
[[Category: National project on protein structural and functional analyse]] | [[Category: National project on protein structural and functional analyse]] | ||
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[[Category: Octamer]] | [[Category: Octamer]] | ||
[[Category: Pyridoxine biosynthesis]] | [[Category: Pyridoxine biosynthesis]] | ||
| - | [[Category: Structural genomic]] | ||
| - | [[Category: Structural genomics of national institute of allergy and infectious disease]] | ||
[[Category: Tim barrel]] | [[Category: Tim barrel]] | ||
[[Category: Transferase]] | [[Category: Transferase]] | ||
Revision as of 08:41, 26 November 2014
Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein PdxJ from Yersinia pestis
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Categories: Pyridoxine 5'-phosphate synthase | Yersinia pestis | Anderson, W F | Structural genomic | Joachimiak, A | Kim, Y | Maltseva, N | Stam, J | Biosynthetic protein | Csgid | National project on protein structural and functional analyse | Nppsfa | Octamer | Pyridoxine biosynthesis | Tim barrel | Transferase
