This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3erp
From Proteopedia
(Difference between revisions)
m (Protected "3erp" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | + | ==Structure of IDP01002, a putative oxidoreductase from and essential gene of Salmonella typhimurium== | |
| - | + | <StructureSection load='3erp' size='340' side='right' caption='[[3erp]], [[Resolution|resolution]] 1.55Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3erp]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ERP FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">STM2406 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3erp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3erp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3erp RCSB], [http://www.ebi.ac.uk/pdbsum/3erp PDBsum], [http://www.topsan.org/Proteins/CSGID/3erp TOPSAN]</span></td></tr> | |
| - | == | + | </table> |
| - | [[3erp]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERP OCA]. | + | == Evolutionary Conservation == |
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3erp_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Salmonella enterica subsp. enterica serovar typhimurium]] | [[Category: Salmonella enterica subsp. enterica serovar typhimurium]] | ||
| - | [[Category: Anderson, W F | + | [[Category: Anderson, W F]] |
| - | [[Category: Brunzelle, J S | + | [[Category: Brunzelle, J S]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Edwards, A M | + | [[Category: Edwards, A M]] |
| - | [[Category: Evdokimova, E | + | [[Category: Evdokimova, E]] |
| - | [[Category: Kudritska, M | + | [[Category: Kudritska, M]] |
| - | [[Category: Minasov, G | + | [[Category: Minasov, G]] |
| - | [[Category: Savchenko, A | + | [[Category: Savchenko, A]] |
| - | [[Category: Singer, A U | + | [[Category: Singer, A U]] |
| - | + | ||
[[Category: Csgid]] | [[Category: Csgid]] | ||
[[Category: Essential gene]] | [[Category: Essential gene]] | ||
| Line 26: | Line 36: | ||
[[Category: Predicted oxidoreductase]] | [[Category: Predicted oxidoreductase]] | ||
[[Category: Salmonella]] | [[Category: Salmonella]] | ||
| - | [[Category: Structural genomic]] | ||
Revision as of 08:42, 26 November 2014
Structure of IDP01002, a putative oxidoreductase from and essential gene of Salmonella typhimurium
| |||||||||||
Categories: Salmonella enterica subsp. enterica serovar typhimurium | Anderson, W F | Brunzelle, J S | Structural genomic | Edwards, A M | Evdokimova, E | Kudritska, M | Minasov, G | Savchenko, A | Singer, A U | Csgid | Essential gene | Funded by the national institute of allergy and infectious diseases of nih contract number hhsn272200700058c | Molecular replacement | Oxidoreductase | Predicted oxidoreductase | Salmonella
