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3eti

From Proteopedia

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[[Image:3eti.png|left|200px]]
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==Structure of a cubic crystal form of X (ADRP) domain from FCoV==
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<StructureSection load='3eti' size='340' side='right' caption='[[3eti]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3eti]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Feline_infectious_peritonitis_virus Feline infectious peritonitis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ETI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ETI FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3eti FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eti OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3eti RCSB], [http://www.ebi.ac.uk/pdbsum/3eti PDBsum]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/et/3eti_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The structure of the X (or ADRP) domain of a pathogenic variant of feline coronavirus (FCoV) has been determined in tetragonal and cubic crystal forms to 3.1 and 2.2 A resolution, respectively. In the tetragonal crystal form, glycerol-3-phosphate was observed in the ADP-ribose-binding site. Both crystal forms contained large solvent channels and had a solvent content of higher than 70%. Only very weak binding of this domain to ADP-ribose was detected in vitro. However, the structure with ADP-ribose bound was determined in the cubic crystal form at 3.9 A resolution. The structure of the FCoV X domain had the expected macro-domain fold and is the first structure of this domain from a coronavirus belonging to subgroup 1a.
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{{STRUCTURE_3eti| PDB=3eti | SCENE= }}
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Structure of the X (ADRP) domain of nsp3 from feline coronavirus.,Wojdyla JA, Manolaridis I, Snijder EJ, Gorbalenya AE, Coutard B, Piotrowski Y, Hilgenfeld R, Tucker PA Acta Crystallogr D Biol Crystallogr. 2009 Dec;65(Pt 12):1292-300. Epub, 2009 Nov 17. PMID:19966415<ref>PMID:19966415</ref>
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===Structure of a cubic crystal form of X (ADRP) domain from FCoV===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_19966415}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[3eti]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Feline_infectious_peritonitis_virus Feline infectious peritonitis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ETI OCA].
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</StructureSection>
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==Reference==
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<ref group="xtra">PMID:019966415</ref><references group="xtra"/>
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[[Category: Feline infectious peritonitis virus]]
[[Category: Feline infectious peritonitis virus]]
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[[Category: Manolaridis, I.]]
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[[Category: Manolaridis, I]]
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[[Category: Tucker, P A.]]
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[[Category: Tucker, P A]]
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[[Category: Wojdyla, J A.]]
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[[Category: Wojdyla, J A]]
[[Category: Adrp]]
[[Category: Adrp]]
[[Category: Coronavirus]]
[[Category: Coronavirus]]

Revision as of 08:50, 26 November 2014

Structure of a cubic crystal form of X (ADRP) domain from FCoV

3eti, resolution 2.20Å

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