3fif
From Proteopedia
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| - | + | ==Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.== | |
| - | + | <StructureSection load='3fif' size='340' side='right' caption='[[3fif]], [[Resolution|resolution]] 2.70Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3fif]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FIF FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2jno|2jno]]</td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ygdR, b2833, JW2801 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 Escherichia coli K-12])</td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fif OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fif RCSB], [http://www.ebi.ac.uk/pdbsum/3fif PDBsum]</span></td></tr> |
| - | [[3fif]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIF OCA]. | + | </table> |
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fif_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
[[Category: Escherichia coli k-12]] | [[Category: Escherichia coli k-12]] | ||
| - | [[Category: Acton, T B | + | [[Category: Acton, T B]] |
| - | [[Category: Baran, M | + | [[Category: Baran, M]] |
| - | [[Category: Chen, C X | + | [[Category: Chen, C X]] |
| - | [[Category: Cunningham, K | + | [[Category: Cunningham, K]] |
| - | [[Category: Hunt, J F | + | [[Category: Hunt, J F]] |
| - | [[Category: Jiang, M | + | [[Category: Jiang, M]] |
| - | [[Category: Kuzin, A P | + | [[Category: Kuzin, A P]] |
| - | [[Category: Liu, J C | + | [[Category: Liu, J C]] |
| - | [[Category: Ma, L | + | [[Category: Ma, L]] |
| - | [[Category: Montelione, G T | + | [[Category: Montelione, G T]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Rossi, P | + | [[Category: Rossi, P]] |
| - | [[Category: Rost, B | + | [[Category: Rost, B]] |
| - | [[Category: Seetharaman, J | + | [[Category: Seetharaman, J]] |
| - | [[Category: Su, M | + | [[Category: Su, M]] |
| - | [[Category: Swapna, G V.T | + | [[Category: Swapna, G V.T]] |
| - | [[Category: Tong, L | + | [[Category: Tong, L]] |
| - | [[Category: Xiao, R | + | [[Category: Xiao, R]] |
[[Category: Cell membrane]] | [[Category: Cell membrane]] | ||
[[Category: Lipoprotein]] | [[Category: Lipoprotein]] | ||
[[Category: Membrane]] | [[Category: Membrane]] | ||
| - | [[Category: Northeast structural genomics consortium]] | ||
[[Category: Palmitate]] | [[Category: Palmitate]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
[[Category: Ygdr ygdr_ecoli nesg x-ray structure]] | [[Category: Ygdr ygdr_ecoli nesg x-ray structure]] | ||
Revision as of 10:07, 3 December 2014
Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.
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Categories: Escherichia coli | Escherichia coli k-12 | Acton, T B | Baran, M | Chen, C X | Cunningham, K | Hunt, J F | Jiang, M | Kuzin, A P | Liu, J C | Ma, L | Montelione, G T | Structural genomic | Rossi, P | Rost, B | Seetharaman, J | Su, M | Swapna, G V.T | Tong, L | Xiao, R | Cell membrane | Lipoprotein | Membrane | Palmitate | PSI, Protein structure initiative | Unknown function | Ygdr ygdr ecoli nesg x-ray structure
