This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3fmu
From Proteopedia
(Difference between revisions)
m (Protected "3fmu" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | + | ==Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii== | |
| - | + | <StructureSection load='3fmu' size='340' side='right' caption='[[3fmu]], [[Resolution|resolution]] 1.04Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3fmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pleurotus_eryngii Pleurotus eryngii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FMU FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2boq|2boq]], [[3fjw|3fjw]], [[3fkg|3fkg]], [[3fm1|3fm1]], [[3fm4|3fm4]], [[3fm6|3fm6]]</td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VPL2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5323 Pleurotus eryngii])</td></tr> | |
| - | == | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Versatile_peroxidase Versatile peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.16 1.11.1.16] </span></td></tr> |
| - | [[3fmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pleurotus_eryngii Pleurotus eryngii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FMU OCA]. | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fmu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fmu RCSB], [http://www.ebi.ac.uk/pdbsum/3fmu PDBsum]</span></td></tr> |
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fm/3fmu_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Pleurotus eryngii]] | [[Category: Pleurotus eryngii]] | ||
[[Category: Versatile peroxidase]] | [[Category: Versatile peroxidase]] | ||
| - | [[Category: Choinowski, T | + | [[Category: Choinowski, T]] |
| - | [[Category: Martinez, A T | + | [[Category: Martinez, A T]] |
| - | [[Category: Piontek, K | + | [[Category: Piontek, K]] |
| - | [[Category: Plattner, D A | + | [[Category: Plattner, D A]] |
[[Category: Electron transfer]] | [[Category: Electron transfer]] | ||
[[Category: Heme]] | [[Category: Heme]] | ||
Revision as of 10:14, 3 December 2014
Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii
| |||||||||||
Categories: Pleurotus eryngii | Versatile peroxidase | Choinowski, T | Martinez, A T | Piontek, K | Plattner, D A | Electron transfer | Heme | Hydrogen peroxide | Iron | Lignin degradation | Lignin peroxidase | Manganese | Manganese peroxidase | Metal-binding | Mn-independent oxidation phenolic non-phenolic aromatic | Mnii oxidation | Oxidoreductase | Peroxidase | Polyvalent peroxidase | Protoporphyrin ix | Secreted | Zymogen
