This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3frw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3frw" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:3frw.png|left|200px]]
+
==Crystal structure of putative TrpR protein from Ruminococcus obeum==
-
 
+
<StructureSection load='3frw' size='340' side='right' caption='[[3frw]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
{{STRUCTURE_3frw| PDB=3frw | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3frw]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruminococcus_obeum_atcc_29174 Ruminococcus obeum atcc 29174]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FRW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FRW FirstGlance]. <br>
-
===Crystal structure of putative TrpR protein from Ruminococcus obeum===
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-
 
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
 
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RUMOBE_00155 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=411459 Ruminococcus obeum ATCC 29174])</td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3frw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3frw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3frw RCSB], [http://www.ebi.ac.uk/pdbsum/3frw PDBsum], [http://www.topsan.org/Proteins/MCSG/3frw TOPSAN]</span></td></tr>
-
[[3frw]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruminococcus_obeum_atcc_29174 Ruminococcus obeum atcc 29174]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FRW OCA].
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fr/3frw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Ruminococcus obeum atcc 29174]]
[[Category: Ruminococcus obeum atcc 29174]]
-
[[Category: Babnigg, G.]]
+
[[Category: Babnigg, G]]
-
[[Category: Jedrzejczak, R.]]
+
[[Category: Jedrzejczak, R]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Joachimiak, A]]
-
[[Category: Keigher, L.]]
+
[[Category: Keigher, L]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Structural genomic]]
-
[[Category: Osipiuk, J.]]
+
[[Category: Osipiuk, J]]
[[Category: Apc21159]]
[[Category: Apc21159]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Trp repressor]]
[[Category: Trp repressor]]
[[Category: Trpr]]
[[Category: Trpr]]
[[Category: Unknown function]]
[[Category: Unknown function]]

Revision as of 10:29, 3 December 2014

Crystal structure of putative TrpR protein from Ruminococcus obeum

3frw, resolution 2.05Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools