3hct
From Proteopedia
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- | [[ | + | ==Crystal structure of TRAF6 in complex with Ubc13 in the P1 space group== |
+ | <StructureSection load='3hct' size='340' side='right' caption='[[3hct]], [[Resolution|resolution]] 2.10Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[3hct]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HCT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HCT FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3hcs|3hcs]], [[3hcu|3hcu]]</td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RNF85, TRAF6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]), BLU, UBE2N ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquitin--protein_ligase Ubiquitin--protein ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.19 6.3.2.19] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hct FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hct OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hct RCSB], [http://www.ebi.ac.uk/pdbsum/3hct PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hc/3hct_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Tumor necrosis factor (TNF) receptor-associated factor (TRAF)-6 mediates Lys63-linked polyubiquitination for NF-kappaB activation via its N-terminal RING and zinc finger domains. Here we report the crystal structures of TRAF6 and its complex with the ubiquitin-conjugating enzyme (E2) Ubc13. The RING and zinc fingers of TRAF6 assume a rigid, elongated structure. Interaction of TRAF6 with Ubc13 involves direct contacts of the RING and the preceding residues, and the first zinc finger has a structural role. Unexpectedly, this region of TRAF6 is dimeric both in the crystal and in solution, different from the trimeric C-terminal TRAF domain. Structure-based mutagenesis reveals that TRAF6 dimerization is crucial for polyubiquitin synthesis and autoubiquitination. Fluorescence resonance energy transfer analysis shows that TRAF6 dimerization induces higher-order oligomerization of full-length TRAF6. The mismatch of dimeric and trimeric symmetry may provide a mode of infinite oligomerization that facilitates ligand-dependent signal transduction of many immune receptors. | ||
- | + | E2 interaction and dimerization in the crystal structure of TRAF6.,Yin Q, Lin SC, Lamothe B, Lu M, Lo YC, Hura G, Zheng L, Rich RL, Campos AD, Myszka DG, Lenardo MJ, Darnay BG, Wu H Nat Struct Mol Biol. 2009 Jun;16(6):658-66. Epub 2009 May 24. PMID:19465916<ref>PMID:19465916</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
+ | </div> | ||
- | + | ==See Also== | |
- | + | *[[Ubiquitin conjugating enzyme|Ubiquitin conjugating enzyme]] | |
- | == | + | == References == |
- | [[ | + | <references/> |
- | + | __TOC__ | |
- | == | + | </StructureSection> |
- | < | + | |
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Ubiquitin--protein ligase]] | [[Category: Ubiquitin--protein ligase]] | ||
- | [[Category: Campos, A D | + | [[Category: Campos, A D]] |
- | [[Category: Darnay, B G | + | [[Category: Darnay, B G]] |
- | [[Category: Hura, G | + | [[Category: Hura, G]] |
- | [[Category: Lamothe, B | + | [[Category: Lamothe, B]] |
- | [[Category: Lenardo, M J | + | [[Category: Lenardo, M J]] |
- | [[Category: Lin, S C | + | [[Category: Lin, S C]] |
- | [[Category: Lo, Y C | + | [[Category: Lo, Y C]] |
- | [[Category: Lu, M | + | [[Category: Lu, M]] |
- | [[Category: Myszka, D G | + | [[Category: Myszka, D G]] |
- | [[Category: Rich, R L | + | [[Category: Rich, R L]] |
- | [[Category: Wu, H | + | [[Category: Wu, H]] |
- | [[Category: Yin, Q | + | [[Category: Yin, Q]] |
- | [[Category: Zheng, L | + | [[Category: Zheng, L]] |
[[Category: Atp-binding]] | [[Category: Atp-binding]] | ||
[[Category: Beta-beta-alpha]] | [[Category: Beta-beta-alpha]] |
Revision as of 09:02, 8 December 2014
Crystal structure of TRAF6 in complex with Ubc13 in the P1 space group
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Categories: Homo sapiens | Ubiquitin--protein ligase | Campos, A D | Darnay, B G | Hura, G | Lamothe, B | Lenardo, M J | Lin, S C | Lo, Y C | Lu, M | Myszka, D G | Rich, R L | Wu, H | Yin, Q | Zheng, L | Atp-binding | Beta-beta-alpha | Cross-brace | Dna damage | Dna repair | Isopeptide bond | Ligase | Metal-binding | Nucleotide-binding | Signaling protein-ligase complex | Ubl conjugation pathway | Zinc-finger