3sit

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:3sit.png|left|200px]]
+
==Crystal structure of porcine CRW-8 Rotavirus VP8* in complex with aceramido-GM3==
 +
<StructureSection load='3sit' size='340' side='right' caption='[[3sit]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3sit]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porcine_rotavirus Porcine rotavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SIT FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr>
 +
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2i2s|2i2s]], [[3sis|3sis]]</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3sit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sit OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3sit RCSB], [http://www.ebi.ac.uk/pdbsum/3sit PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Rotaviruses ubiquitously infect children under the age of 5, being responsible for more than half a million diarrhoeal deaths each year worldwide. Host cell oligosaccharides containing sialic acid(s) are critical for attachment by rotaviruses. However, to date, no detailed three-dimensional atomic model showing the exact rotavirus interactions with these glycoconjugate receptors has been reported. Here, we present the first crystallographic structures of the rotavirus carbohydrate-recognizing protein VP8() in complex with ganglioside G(M3) glycans. In combination with assessment of the inhibition of rotavirus infectivity by N-acetyl and N-glycolyl forms of this ganglioside, our results reveal key details of rotavirus-ganglioside G(M3) glycan recognition. In addition, they show a direct correlation between the carbohydrate specificities exhibited by VP8() from porcine and by monkey rotaviruses and the respective infectious virus particles. These novel results also indicate the potential binding interactions of rotavirus VP8() with other sialic acid-containing gangliosides.
-
{{STRUCTURE_3sit| PDB=3sit | SCENE= }}
+
Novel Structural Insights into Rotavirus Recognition of Ganglioside Glycan Receptors.,Yu X, Coulson BS, Fleming FE, Dyason JC, von Itzstein M, Blanchard H J Mol Biol. 2011 Sep 17. PMID:21945555<ref>PMID:21945555</ref>
-
===Crystal structure of porcine CRW-8 Rotavirus VP8* in complex with aceramido-GM3===
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
{{ABSTRACT_PUBMED_21945555}}
+
-
 
+
-
==About this Structure==
+
-
[[3sit]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porcine_rotavirus Porcine rotavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SIT OCA].
+
==See Also==
==See Also==
*[[Virus coat protein|Virus coat protein]]
*[[Virus coat protein|Virus coat protein]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:021945555</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
[[Category: Porcine rotavirus]]
[[Category: Porcine rotavirus]]
-
[[Category: Blanchard, H.]]
+
[[Category: Blanchard, H]]
-
[[Category: Yu, X.]]
+
[[Category: Yu, X]]
[[Category: Beta sandwich]]
[[Category: Beta sandwich]]
[[Category: Gm3]]
[[Category: Gm3]]

Revision as of 10:33, 9 December 2014

Crystal structure of porcine CRW-8 Rotavirus VP8* in complex with aceramido-GM3

3sit, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools