1n9j
From Proteopedia
| Line 1: | Line 1: | ||
| - | [[Image:1n9j.jpg|left|200px]] | + | [[Image:1n9j.jpg|left|200px]] |
| - | + | ||
| - | '''Solution Structure of the 3D domain swapped dimer of Stefin A''' | + | {{Structure |
| + | |PDB= 1n9j |SIZE=350|CAPTION= <scene name='initialview01'>1n9j</scene> | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''Solution Structure of the 3D domain swapped dimer of Stefin A''' | ||
| + | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
| - | 1N9J is a [ | + | 1N9J is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9J OCA]. |
==Reference== | ==Reference== | ||
| - | Three-dimensional domain swapping in the folded and molten-globule states of cystatins, an amyloid-forming structural superfamily., Staniforth RA, Giannini S, Higgins LD, Conroy MJ, Hounslow AM, Jerala R, Craven CJ, Waltho JP, EMBO J. 2001 Sep 3;20(17):4774-81. PMID:[http:// | + | Three-dimensional domain swapping in the folded and molten-globule states of cystatins, an amyloid-forming structural superfamily., Staniforth RA, Giannini S, Higgins LD, Conroy MJ, Hounslow AM, Jerala R, Craven CJ, Waltho JP, EMBO J. 2001 Sep 3;20(17):4774-81. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11532941 11532941] |
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| Line 22: | Line 31: | ||
[[Category: Waltho, J P.]] | [[Category: Waltho, J P.]] | ||
[[Category: amyloid]] | [[Category: amyloid]] | ||
| - | [[Category: | + | [[Category: cystatin]] |
[[Category: domain swapped]] | [[Category: domain swapped]] | ||
| - | [[Category: stefin | + | [[Category: stefin some]] |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:53:56 2008'' |
Revision as of 10:53, 20 March 2008
| |||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Solution Structure of the 3D domain swapped dimer of Stefin A
Overview
Cystatins, an amyloid-forming structural superfamily, form highly stable, domain-swapped dimers at physiological protein concentrations. In chicken cystatin, the active monomer is a kinetic trap en route to dimerization, and any changes in solution conditions or mutations that destabilize the folded state shorten the lifetime of the monomeric form. In such circumstances, amyloidogenesis will start from conditions where a domain-swapped dimer is the most prevalent species. Domain swapping occurs by a rearrangement of loop I, generating the new intermonomer interface between strands 2 and 3. The transition state for dimerization has a high level of hydrophobic group exposure, indicating that gross conformational perturbation is required for domain swapping to occur. Dimerization also occurs when chicken cystatin is in its reduced, molten-globule state, implying that the organization of secondary structure in this state mirrors that in the folded state and that domain swapping is not limited to the folded states of proteins. Although the interface between cystatin-fold units is poorly defined for cystatin A, the dimers are the appropriate size to account for the electron-dense regions in amyloid protofilaments.
About this Structure
1N9J is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.
Reference
Three-dimensional domain swapping in the folded and molten-globule states of cystatins, an amyloid-forming structural superfamily., Staniforth RA, Giannini S, Higgins LD, Conroy MJ, Hounslow AM, Jerala R, Craven CJ, Waltho JP, EMBO J. 2001 Sep 3;20(17):4774-81. PMID:11532941
Page seeded by OCA on Thu Mar 20 12:53:56 2008
