3rj1

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[[Image:3rj1.png|left|200px]]
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==Architecture of the Mediator Head module==
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<StructureSection load='3rj1' size='340' side='right' caption='[[3rj1]], [[Resolution|resolution]] 4.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3rj1]] is a 21 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RJ1 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SE:SELENIUM+ATOM'>SE</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2hzs|2hzs]], [[2hzm|2hzm]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MED11, YMR112C, YM9718.11C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae]), SRB4, MED17, YER022W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae]), MED8, YBR193C, YBR1403 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae]), SRB6, MED22, YBR253W, YBR1721 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae]), SRB5, MED18, YGR104C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae]), SRB2, HRS2, MED20, YHR041C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae]), MED6, MTR32, YHR058C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rj1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rj1 RCSB], [http://www.ebi.ac.uk/pdbsum/3rj1 PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Mediator is a key regulator of eukaryotic transcription, connecting activators and repressors bound to regulatory DNA elements with RNA polymerase II (Pol II). In the yeast Saccharomyces cerevisiae, Mediator comprises 25 subunits with a total mass of more than one megadalton (refs 5, 6) and is organized into three modules, called head, middle/arm and tail. Our understanding of Mediator assembly and its role in regulating transcription has been impeded so far by limited structural information. Here we report the crystal structure of the essential Mediator head module (seven subunits, with a mass of 223 kilodaltons) at a resolution of 4.3 angstroms. Our structure reveals three distinct domains, with the integrity of the complex centred on a bundle of ten helices from five different head subunits. An intricate pattern of interactions within this helical bundle ensures the stable assembly of the head subunits and provides the binding sites for general transcription factors and Pol II. Our structural and functional data suggest that the head module juxtaposes transcription factor IIH and the carboxy-terminal domain of the largest subunit of Pol II, thereby facilitating phosphorylation of the carboxy-terminal domain of Pol II. Our results reveal architectural principles underlying the role of Mediator in the regulation of gene expression.
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{{STRUCTURE_3rj1| PDB=3rj1 | SCENE= }}
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Architecture of the Mediator head module.,Imasaki T, Calero G, Cai G, Tsai KL, Yamada K, Cardelli F, Erdjument-Bromage H, Tempst P, Berger I, Kornberg GL, Asturias FJ, Kornberg RD, Takagi Y Nature. 2011 Jul 3;475(7355):240-3. doi: 10.1038/nature10162. PMID:21725323<ref>PMID:21725323</ref>
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===Architecture of the Mediator Head module===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_21725323}}
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==About this Structure==
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[[3rj1]] is a 21 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RJ1 OCA].
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==See Also==
==See Also==
*[[Mediator|Mediator]]
*[[Mediator|Mediator]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:021725323</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
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[[Category: Asturias, F J.]]
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[[Category: Asturias, F J]]
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[[Category: Berger, I.]]
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[[Category: Berger, I]]
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[[Category: Cai, G.]]
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[[Category: Cai, G]]
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[[Category: Calero, G.]]
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[[Category: Calero, G]]
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[[Category: Cardelli, F.]]
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[[Category: Cardelli, F]]
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[[Category: Erdjument-Bromage, H.]]
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[[Category: Erdjument-Bromage, H]]
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[[Category: Imasaki, T.]]
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[[Category: Imasaki, T]]
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[[Category: Kornberg, G L.]]
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[[Category: Kornberg, G L]]
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[[Category: Kornberg, R D.]]
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[[Category: Kornberg, R D]]
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[[Category: Takagi, Y.]]
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[[Category: Takagi, Y]]
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[[Category: Tempst, P.]]
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[[Category: Tempst, P]]
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[[Category: Tsai, K L.]]
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[[Category: Tsai, K L]]
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[[Category: Yamada, K.]]
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[[Category: Yamada, K]]
[[Category: Head module]]
[[Category: Head module]]
[[Category: Helical bundle]]
[[Category: Helical bundle]]

Revision as of 12:26, 9 December 2014

Architecture of the Mediator Head module

3rj1, resolution 4.30Å

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