3oy9

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[[Image:3oy9.png|left|200px]]
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==Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolution==
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<StructureSection load='3oy9' size='340' side='right' caption='[[3oy9]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3oy9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_spumaretrovirus Human spumaretrovirus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3l2s 3l2s]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OY9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OY9 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dlr|3dlr]], [[3l2q|3l2q]], [[3l2r|3l2r]], [[3l2u|3l2u]], [[3l2v|3l2v]], [[3l2w|3l2w]], [[3oya|3oya]], [[3oyb|3oyb]], [[3oyc|3oyc]], [[3oyd|3oyd]], [[3oye|3oye]], [[3oyf|3oyf]], [[3oyg|3oyg]], [[3oyh|3oyh]], [[3oyi|3oyi]], [[3oyj|3oyj]], [[3oyk|3oyk]], [[3oyl|3oyl]], [[3oym|3oym]], [[3oyn|3oyn]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">POL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11963 Human spumaretrovirus])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oy9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oy9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3oy9 RCSB], [http://www.ebi.ac.uk/pdbsum/3oy9 PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Integrase is an essential retroviral enzyme that binds both termini of linear viral DNA and inserts them into a host cell chromosome. The structure of full-length retroviral integrase, either separately or in complex with DNA, has been lacking. Furthermore, although clinically useful inhibitors of HIV integrase have been developed, their mechanism of action remains speculative. Here we present a crystal structure of full-length integrase from the prototype foamy virus in complex with its cognate DNA. The structure shows the organization of the retroviral intasome comprising an integrase tetramer tightly associated with a pair of viral DNA ends. All three canonical integrase structural domains are involved in extensive protein-DNA and protein-protein interactions. The binding of strand-transfer inhibitors displaces the reactive viral DNA end from the active site, disarming the viral nucleoprotein complex. Our findings define the structural basis of retroviral DNA integration, and will allow modelling of the HIV-1 intasome to aid in the development of antiretroviral drugs.
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{{STRUCTURE_3oy9| PDB=3oy9 | SCENE= }}
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Retroviral intasome assembly and inhibition of DNA strand transfer.,Hare S, Gupta SS, Valkov E, Engelman A, Cherepanov P Nature. 2010 Mar 11;464(7286):232-6. Epub 2010 Jan 31. PMID:20118915<ref>PMID:20118915</ref>
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===Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolution===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_20118915}}
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==About this Structure==
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[[3oy9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_spumaretrovirus Human spumaretrovirus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3l2s 3l2s]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OY9 OCA].
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==See Also==
==See Also==
*[[Retroviral Integrase|Retroviral Integrase]]
*[[Retroviral Integrase|Retroviral Integrase]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:020118915</ref><ref group="xtra">PMID:021030679</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Human spumaretrovirus]]
[[Category: Human spumaretrovirus]]
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[[Category: Cherepanov, P.]]
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[[Category: Cherepanov, P]]
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[[Category: Hare, S.]]
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[[Category: Hare, S]]
[[Category: Dna integration]]
[[Category: Dna integration]]
[[Category: Dna-binding]]
[[Category: Dna-binding]]

Revision as of 13:26, 9 December 2014

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolution

3oy9, resolution 2.55Å

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