3rsr
From Proteopedia
(Difference between revisions)
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- | [[ | + | ==Crystal Structure of 5-NITP Inhibition of Yeast Ribonucleotide Reductase== |
+ | <StructureSection load='3rsr' size='340' side='right' caption='[[3rsr]], [[Resolution|resolution]] 2.30Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[3rsr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RSR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RSR FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=N5P:1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-5-NITRO-1H-INDOLE'>N5P</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2cvv|2cvv]], [[2cvu|2cvu]], [[2cvw|2cvw]], [[2cvx|2cvx]], [[2cvy|2cvy]], [[2cvs|2cvs]]</td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RNR1, CRT7, RIR1, SDS12, YER070W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonucleoside-diphosphate_reductase Ribonucleoside-diphosphate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.4.1 1.17.4.1] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rsr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rsr RCSB], [http://www.ebi.ac.uk/pdbsum/3rsr PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Human ribonucleotide reductase (hRR) is the key enzyme involved in de novo dNTP synthesis and thus represents an important therapeutic target against hyperproliferative diseases, most notably cancer. The purpose of this study was to evaluate the ability of non-natural indolyl-2'-deoxynucleoside triphosphates to inhibit the activity of hRR. The structural similarities of these analogues with dATP predicted that they would inhibit hRR activity by binding to its allosteric sites. In silico analysis and in vitro characterization identified one particular analogue designated as 5-nitro-indolyl-2'-deoxyribose triphosphate (5-NITP) that inhibits hRR. 5-NITP binding to hRR was determined by isothermal titration calorimetry. X-ray crystal structure of 5-NITP bound to RR1 was determined. Cell-based studies showed the anti-cancer effects of the corresponding non-natural nucleoside against leukemia cells. 5-NITP binds to hRR with micromolar affinity. Binding does not induce hexamerization of hRR1 like dATP, the native allosteric inhibitor of hRR that binds with high affinity to the A-site. The X-ray crystal structure of Saccharomyces cerevisiae RR1-5-NITP (ScRR1-5-NITP) complex determined to 2.3 A resolution shows that 5-NITP does not bind to the A-site but rather at the S-site. Regardless, 5-nitro-indolyl-2'-deoxynucleoside (5-NIdR) produces cytostatic and cytotoxic effects against human leukemia cells by altering cell-cycle progression. Our studies provide useful insights toward developing new inhibitors with improved potency and efficacy against hRR. Mol Cancer Ther; 11(10); 2077-86. (c)2012 AACR. | ||
- | + | Evaluating the therapeutic potential of a non-natural nucleotide that inhibits human ribonucleotide reductase.,Ahmad MF, Wan Q, Jha S, Motea E, Berdis A, Dealwis C Mol Cancer Ther. 2012 Oct;11(10):2077-86. doi: 10.1158/1535-7163.MCT-12-0199., Epub 2012 Aug 28. PMID:22933704<ref>PMID:22933704</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
+ | </div> | ||
- | + | ==See Also== | |
- | == | + | *[[Ribonucleotide reductase|Ribonucleotide reductase]] |
- | [[ | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Ribonucleoside-diphosphate reductase]] | [[Category: Ribonucleoside-diphosphate reductase]] | ||
[[Category: Saccharomyces cerevisiae]] | [[Category: Saccharomyces cerevisiae]] | ||
- | [[Category: Berdis, A | + | [[Category: Berdis, A]] |
- | [[Category: Dealwis, C G | + | [[Category: Dealwis, C G]] |
- | [[Category: Jha, S | + | [[Category: Jha, S]] |
- | [[Category: Mohammed, F | + | [[Category: Mohammed, F]] |
- | [[Category: Motea, E | + | [[Category: Motea, E]] |
- | [[Category: Wan, Q | + | [[Category: Wan, Q]] |
[[Category: 10-stranded alpha/beta barrel]] | [[Category: 10-stranded alpha/beta barrel]] | ||
[[Category: Nucleotide reduction]] | [[Category: Nucleotide reduction]] | ||
[[Category: Oxidized]] | [[Category: Oxidized]] | ||
[[Category: Oxidoreductase]] | [[Category: Oxidoreductase]] |
Revision as of 13:38, 9 December 2014
Crystal Structure of 5-NITP Inhibition of Yeast Ribonucleotide Reductase
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