4apv
From Proteopedia
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| - | [[ | + | ==The Klebsiella pneumoniae primosomal PriB protein: identification, crystal structure, and ssDNA binding mode== |
| + | <StructureSection load='4apv' size='340' side='right' caption='[[4apv]], [[Resolution|resolution]] 2.10Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4apv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4APV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4APV FirstGlance]. <br> | ||
| + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4apv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4apv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4apv RCSB], [http://www.ebi.ac.uk/pdbsum/4apv PDBsum]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | PriB is a primosomal DNA replication protein required for the re-initiation of replication in bacteria. In this study, we investigated the gene expression of PriB in Klebsiella pneumoniae (KpPriB) and characterized the gene product through crystal structural and functional analyses. Quantitative polymerase chain reaction analysis (Q-PCR) indicated that the 104-aa priB was expressed in K. pneumoniae with a C(T) value of 22.4. The crystal structure of KpPriB (Protein Data Bank entry: 4APV) determined at a resolution of 2.1 A was similar to that of Escherichia coli PriB (EcPriB). KpPriB formed a single complex with single-stranded DNA (ssDNA) of different lengths, suggesting a highly cooperative process. Structure-based mutational analysis revealed that substitution at K18, F42, R44, W47, K82, K84, or K89 but not R34 in KpPriB had a significant effect on both ssDNA and double-stranded DNA (dsDNA) binding. Based on these findings, the known ssDNA interaction sites of PriB were expanded to include R44 and F42, thus allowing nucleic acids to wrap around the whole PriB protein. | ||
| - | + | Crystal structure and DNA-binding mode of Klebsiella pneumoniae primosomal PriB protein.,Huang YH, Lo YH, Huang W, Huang CY Genes Cells. 2012 Oct;17(10):837-49. doi: 10.1111/gtc.12001. Epub 2012 Sep 3. PMID:22938024<ref>PMID:22938024</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | + | == References == | |
| - | + | <references/> | |
| - | == | + | __TOC__ |
| - | + | </StructureSection> | |
[[Category: Klebsiella pneumoniae]] | [[Category: Klebsiella pneumoniae]] | ||
| - | [[Category: Hsiao, C D | + | [[Category: Hsiao, C D]] |
| - | [[Category: Huang, C Y | + | [[Category: Huang, C Y]] |
| - | [[Category: Huang, Y H | + | [[Category: Huang, Y H]] |
| - | [[Category: Lo, Y H | + | [[Category: Lo, Y H]] |
[[Category: Prib primosome ssdna binding]] | [[Category: Prib primosome ssdna binding]] | ||
[[Category: Replication]] | [[Category: Replication]] | ||
Revision as of 14:21, 9 December 2014
The Klebsiella pneumoniae primosomal PriB protein: identification, crystal structure, and ssDNA binding mode
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