1o0e
From Proteopedia
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| - | [[Image:1o0e.jpg|left|200px]] | + | [[Image:1o0e.jpg|left|200px]] |
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| - | '''1.9 Angstrom Crystal Structure of a plant cysteine protease Ervatamin C''' | + | {{Structure |
| + | |PDB= 1o0e |SIZE=350|CAPTION= <scene name='initialview01'>1o0e</scene>, resolution 1.90Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=THJ:TETRATHIONATE'>THJ</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
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| + | '''1.9 Angstrom Crystal Structure of a plant cysteine protease Ervatamin C''' | ||
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==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1O0E is a [ | + | 1O0E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Tabernaemontana_divaricata Tabernaemontana divaricata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O0E OCA]. |
==Reference== | ==Reference== | ||
| - | Structural basis of the unusual stability and substrate specificity of ervatamin C, a plant cysteine protease from Ervatamia coronaria., Thakurta PG, Biswas S, Chakrabarti C, Sundd M, Jagannadham MV, Dattagupta JK, Biochemistry. 2004 Feb 17;43(6):1532-40. PMID:[http:// | + | Structural basis of the unusual stability and substrate specificity of ervatamin C, a plant cysteine protease from Ervatamia coronaria., Thakurta PG, Biswas S, Chakrabarti C, Sundd M, Jagannadham MV, Dattagupta JK, Biochemistry. 2004 Feb 17;43(6):1532-40. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14769029 14769029] |
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Tabernaemontana divaricata]] | [[Category: Tabernaemontana divaricata]] | ||
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[[Category: two domain]] | [[Category: two domain]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:04:06 2008'' |
Revision as of 11:04, 20 March 2008
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| , resolution 1.90Å | |||||||
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| Coordinates: | save as pdb, mmCIF, xml | ||||||
1.9 Angstrom Crystal Structure of a plant cysteine protease Ervatamin C
Overview
Ervatamin C is an unusually stable cysteine protease from the medicinal plant Ervatamia coronaria belonging to the papain family. Though it cleaves denatured natural proteins with high specific activity, its activity toward some small synthetic substrates is found to be insignificant. The three-dimensional structure and amino acid sequence of the protein have been determined from X-ray diffraction data at 1.9 A (R = 17.7% and R(free) = 19.0%). The overall structure of ervatamin C is similar to those of other homologous cysteine proteases of the family, folding into two distinct left and right domains separated by an active site cleft. However, substitution of a few amino acid residues, which are conserved in the other members of the family, has been observed in both the domains and also at the region of the interdomain cleft. Consequently, the number of intra- and interdomain hydrogen-bonding interactions is enhanced in the structure of ervatamin C. Moreover, a unique disulfide bond has been identified in the right domain of the structure, in addition to the three conserved disulfide bridges present in the papain family. All these factors contribute to an increase in the stability of ervatamin C. In this enzyme, the nature of the S2 subsite, which is the primary determinant of specificity of these proteases, is similar to that of papain, but at the S3 subsite, Ala67 replaces an aromatic residue, and has the effect of eliminating sufficient hydrophobic interactions required for S3-P3 stabilization. This provides the possible explanation for the lower activity of ervatamin C toward the small substrate/inhibitor. This substitution, however, does not affect the binding of denatured natural protein substrates to the enzyme significantly, as there exist a number of additional interactions at the enzyme-substrate interface outside the active site cleft.
About this Structure
1O0E is a Single protein structure of sequence from Tabernaemontana divaricata. Full crystallographic information is available from OCA.
Reference
Structural basis of the unusual stability and substrate specificity of ervatamin C, a plant cysteine protease from Ervatamia coronaria., Thakurta PG, Biswas S, Chakrabarti C, Sundd M, Jagannadham MV, Dattagupta JK, Biochemistry. 2004 Feb 17;43(6):1532-40. PMID:14769029
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