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4be1

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[[Image:4be1.png|left|200px]]
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==PFV intasome with inhibitor XZ-116==
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<StructureSection load='4be1' size='340' side='right' caption='[[4be1]], [[Resolution|resolution]] 2.71&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4be1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_spumaretrovirus Human spumaretrovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BE1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BE1 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CI4:2-(3-CHLORO-2-FLUOROBENZYL)-6,7-DIHYDROXY-2,3-DIHYDRO-1H-ISOINDOL-1-ONE'>CI4</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2x6n|2x6n]], [[2x6s|2x6s]], [[2x74|2x74]], [[2x78|2x78]], [[4bac|4bac]], [[4bdy|4bdy]], [[4bdz|4bdz]], [[4be0|4be0]], [[4be2|4be2]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4be1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4be1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4be1 RCSB], [http://www.ebi.ac.uk/pdbsum/4be1 PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Based on a series of lactam and phthalimide derivatives that inhibit HIV-1 integrase, we developed a new derivative, XZ-259, with biochemical and antiviral activities comparable to raltegravir. We determined the crystal structures of XZ-259 and four other derivatives in complex with the prototype foamy virus intasome. The compounds bind at the integrase-Mg2+-DNA interface of the integrase active site. In biochemical and antiviral assays, XZ-259 inhibits raltegravir-resistant HIV-1 integrases harboring the Y143R mutation. Molecular modeling is also presented suggesting that XZ-259 can bind in the HIV-1 intasome with its dimethyl sulfonamide group adopting two opposite orientations. Molecular dynamics analyses of the HIV-1 intasome highlight the importance of the viral DNA in drug potency.
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{{STRUCTURE_4be1| PDB=4be1 | SCENE= }}
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Activities, crystal structures and molecular dynamics of dihydro-1H-isoindole derivatives, inhibitors of HIV-1 integrase.,Metifiot M, Maddali K, Johnson BC, Hare S, Smith SJ, Zhao XZ, Marchand C, Burke TR, Hughes SH, Cherepanov P, Pommier Y ACS Chem Biol. 2012 Oct 17. PMID:23075516<ref>PMID:23075516</ref>
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===PFV intasome with inhibitor XZ-116===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_23075516}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[4be1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_spumaretrovirus Human spumaretrovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BE1 OCA].
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</StructureSection>
[[Category: Human spumaretrovirus]]
[[Category: Human spumaretrovirus]]
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[[Category: Cherepanov, P.]]
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[[Category: Cherepanov, P]]
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[[Category: Hare, S.]]
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[[Category: Hare, S]]
[[Category: Dna integration]]
[[Category: Dna integration]]
[[Category: Dna-binding]]
[[Category: Dna-binding]]

Revision as of 17:37, 9 December 2014

PFV intasome with inhibitor XZ-116

4be1, resolution 2.71Å

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