4gd3

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[[Image:4gd3.png|left|200px]]
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==Structure of E. coli hydrogenase-1 in complex with cytochrome b==
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<StructureSection load='4gd3' size='340' side='right' caption='[[4gd3]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4gd3]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Cotula Cotula] and [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GD3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GD3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=F4S:FE4-S3+CLUSTER'>F4S</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3uqy|3uqy]], [[3usc|3usc]], [[3use|3use]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b0972, hyaA, JW0954 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 Escherichia coli K-12]), b0973, hyaB, JW0955 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99043 Cotula]), b0974, hyaC, JW0956 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 Escherichia coli K-12])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrogenase_(acceptor) Hydrogenase (acceptor)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.99.6 1.12.99.6] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gd3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4gd3 RCSB], [http://www.ebi.ac.uk/pdbsum/4gd3 PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We report the 3.3 A resolution structure of dimeric membrane-bound O(2)-tolerant hydrogenase 1 from Escherichia coli in a 2:1 complex with its physiological partner, cytochrome b. From the short distance between distal [Fe(4)S(4)] clusters, we predict rapid transfer of H(2)-derived electrons between hydrogenase heterodimers. Thus, under low O(2) levels, a functional active site in one heterodimer can reductively reactivate its O(2)-exposed counterpart in the other. Hydrogenase 1 is maximally expressed during fermentation, when electron acceptors are scarce. These conditions are achieved in the lower part of the host's intestinal tract when E. coli is soon to be excreted and undergo an anaerobic-to-aerobic metabolic transition. The apparent paradox of having an O(2)-tolerant hydrogenase expressed under anoxia makes sense if the enzyme functions to keep intracellular O(2) levels low by reducing it to water, protecting O(2)-sensitive enzymes during the transition. Cytochrome b's main role may be anchoring the hydrogenase to the membrane.
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{{STRUCTURE_4gd3| PDB=4gd3 | SCENE= }}
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Crystal Structure of the O(2)-Tolerant Membrane-Bound Hydrogenase 1 from Escherichia coli in Complex with Its Cognate Cytochrome b.,Volbeda A, Darnault C, Parkin A, Sargent F, Armstrong FA, Fontecilla-Camps JC Structure. 2012 Dec 19. pii: S0969-2126(12)00425-X. doi:, 10.1016/j.str.2012.11.010. PMID:23260654<ref>PMID:23260654</ref>
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===Structure of E. coli hydrogenase-1 in complex with cytochrome b===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_23260654}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[4gd3]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Cotula Cotula] and [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GD3 OCA].
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</StructureSection>
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==Reference==
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<ref group="xtra">PMID:022431599</ref><references group="xtra"/>
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[[Category: Cotula]]
[[Category: Cotula]]
[[Category: Escherichia coli k-12]]
[[Category: Escherichia coli k-12]]
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[[Category: Darnault, C.]]
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[[Category: Darnault, C]]
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[[Category: Fontecilla-Camps, J C.]]
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[[Category: Fontecilla-Camps, J C]]
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[[Category: Volbeda, A.]]
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[[Category: Volbeda, A]]
[[Category: Membrane-bound]]
[[Category: Membrane-bound]]
[[Category: Ni-fe-hydrogenase-cytochrome b complex]]
[[Category: Ni-fe-hydrogenase-cytochrome b complex]]
[[Category: O2-tolerant h2:quinone oxidoreductase]]
[[Category: O2-tolerant h2:quinone oxidoreductase]]
[[Category: Oxidoreductase-electron transport complex]]
[[Category: Oxidoreductase-electron transport complex]]

Revision as of 09:51, 10 December 2014

Structure of E. coli hydrogenase-1 in complex with cytochrome b

4gd3, resolution 3.30Å

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