1osm
From Proteopedia
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| - | [[Image:1osm.jpg|left|200px]] | + | [[Image:1osm.jpg|left|200px]] |
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| - | '''OSMOPORIN (OMPK36) FROM KLEBSIELLA PNEUMONIAE''' | + | {{Structure |
| + | |PDB= 1osm |SIZE=350|CAPTION= <scene name='initialview01'>1osm</scene>, resolution 3.2Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=D12:DODECANE'>D12</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
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| + | '''OSMOPORIN (OMPK36) FROM KLEBSIELLA PNEUMONIAE''' | ||
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==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1OSM is a [ | + | 1OSM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OSM OCA]. |
==Reference== | ==Reference== | ||
| - | Crystal structure and functional characterization of OmpK36, the osmoporin of Klebsiella pneumoniae., Dutzler R, Rummel G, Alberti S, Hernandez-Alles S, Phale P, Rosenbusch J, Benedi V, Schirmer T, Structure. 1999 Apr 15;7(4):425-34. PMID:[http:// | + | Crystal structure and functional characterization of OmpK36, the osmoporin of Klebsiella pneumoniae., Dutzler R, Rummel G, Alberti S, Hernandez-Alles S, Phale P, Rosenbusch J, Benedi V, Schirmer T, Structure. 1999 Apr 15;7(4):425-34. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10196126 10196126] |
[[Category: Klebsiella pneumoniae]] | [[Category: Klebsiella pneumoniae]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: transmembrane]] | [[Category: transmembrane]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:15:04 2008'' |
Revision as of 11:15, 20 March 2008
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| Coordinates: | save as pdb, mmCIF, xml | ||||||
OSMOPORIN (OMPK36) FROM KLEBSIELLA PNEUMONIAE
Overview
BACKGROUND: Porins are channel-forming membrane proteins that confer solute permeability to the outer membrane of Gram-negative bacteria. In Escherichia coli, major nonspecific porins are matrix porin (OmpF) and osmoporin (OmpC), which show high sequence homology. In response to high osmolarity of the medium, OmpC is expressed at the expense of OmpF porin. Here, we study osmoporin of the pathogenic Klebsiella pneumoniae (OmpK36), which shares 87% sequence identity with E. coliOmpC in an attempt to establish why osmoporin is best suited to function at high osmotic pressure. RESULTS: The crystal structure of OmpK36 has been determined to a resolution of 3.2 A by molecular replacement with the model of OmpF. The structure of OmpK36 closely resembles that of the search model. The homotrimeric structure is composed of three hollow 16-stranded antiparallel beta barrels, each delimiting a separate pore. Most insertions and deletions with respect to OmpF are found in the loops that protrude towards the cell exterior. A characteristic ten-residue insertion in loop 4 contributes to the subunit interface. At the pore constriction, the replacement of an alanine by a tyrosine residue does not alter the pore profile of OmpK36 in comparison with OmpF because of the different course of the mainchain. Functionally, as characterized in lipid bilayers and liposomes, OmpK36 resembles OmpC with decreased conductance and increased cation selectivity in comparison with OmpF. CONCLUSIONS: The osmoporin structure suggests that not an altered pore size but an increase in charge density is the basis for the distinct physico-chemical properties of this porin that are relevant for its preferential expression at high osmotic strength.
About this Structure
1OSM is a Single protein structure of sequence from Klebsiella pneumoniae. Full crystallographic information is available from OCA.
Reference
Crystal structure and functional characterization of OmpK36, the osmoporin of Klebsiella pneumoniae., Dutzler R, Rummel G, Alberti S, Hernandez-Alles S, Phale P, Rosenbusch J, Benedi V, Schirmer T, Structure. 1999 Apr 15;7(4):425-34. PMID:10196126
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