2ont

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{{STRUCTURE_2ont| PDB=2ont | SCENE= }}
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==A swapped dimer of the HIV-1 capsid C-terminal domain==
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===A swapped dimer of the HIV-1 capsid C-terminal domain===
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<StructureSection load='2ont' size='340' side='right' caption='[[2ont]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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{{ABSTRACT_PUBMED_17360528}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2ont]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_type_1_(new_york-5_isolate) Human immunodeficiency virus type 1 (new york-5 isolate)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ONT FirstGlance]. <br>
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</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gag-pol ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11698 Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ont FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ont OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ont RCSB], [http://www.ebi.ac.uk/pdbsum/2ont PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Assembly of the HIV and other retroviruses is primarily driven by the oligomerization of the Gag polyprotein, the major viral structural protein capable of forming virus-like particles even in the absence of all other virally encoded components. Several critical determinants of Gag oligomerization are located in the C-terminal domain of the capsid protein (CA-CTD), which encompasses the most conserved segment in the highly variable Gag protein called the major homology region (MHR). The CA-CTD is thought to function as a dimerization module, although the existing model of CA-CTD dimerization does not readily explain why the conserved residues of the MHR are essential for retroviral assembly. Here we describe an x-ray structure of a distinct domain-swapped variant of the HIV-1 CA-CTD dimer stabilized by a single amino acid deletion. In the domain-swapped structure, the MHR-containing segment forms a major part of the dimerization interface, providing a structural mechanism for the enigmatic function of the MHR in HIV assembly. Our observations suggest that swapping of the MHR segments of adjacent Gag molecules may be a critical intermediate in retroviral assembly.
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==About this Structure==
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Domain-swapped dimerization of the HIV-1 capsid C-terminal domain.,Ivanov D, Tsodikov OV, Kasanov J, Ellenberger T, Wagner G, Collins T Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4353-8. Epub 2007 Mar 5. PMID:17360528<ref>PMID:17360528</ref>
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[[2ont]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_type_1_(new_york-5_isolate) Human immunodeficiency virus type 1 (new york-5 isolate)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONT OCA].
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
==See Also==
==See Also==
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*[[Hiv-1 gag|Hiv-1 gag]]
 
*[[Virus coat protein|Virus coat protein]]
*[[Virus coat protein|Virus coat protein]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:017360528</ref><references group="xtra"/>
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__TOC__
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[[Category: Collins, T.]]
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</StructureSection>
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[[Category: Ellenberger, T.]]
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[[Category: Collins, T]]
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[[Category: Ivanov, D.]]
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[[Category: Ellenberger, T]]
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[[Category: Kasanov, J.]]
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[[Category: Ivanov, D]]
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[[Category: Tsodikov, O V.]]
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[[Category: Kasanov, J]]
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[[Category: Wagner, G.]]
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[[Category: Tsodikov, O V]]
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[[Category: Wagner, G]]
[[Category: Capsid]]
[[Category: Capsid]]
[[Category: Domain swap]]
[[Category: Domain swap]]

Revision as of 13:48, 17 December 2014

A swapped dimer of the HIV-1 capsid C-terminal domain

2ont, resolution 2.40Å

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