1pvz
From Proteopedia
(Difference between revisions)
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- | + | ==Solution Structure of BmP07, A Novel Potassium Channel Blocker from Scorpion Buthus martensi Karsch, 15 structures== | |
- | + | <StructureSection load='1pvz' size='340' side='right' caption='[[1pvz]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''> | |
- | + | == Structural highlights == | |
+ | <table><tr><td colspan='2'>[[1pvz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mesobuthus_martensii Mesobuthus martensii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PVZ FirstGlance]. <br> | ||
+ | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1du9|1du9]], [[1pnh|1pnh]], [[1acw|1acw]], [[1scy|1scy]]</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pvz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pvz RCSB], [http://www.ebi.ac.uk/pdbsum/1pvz PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | A natural K+ channel blocker, BmKK2 (a member of scorpion toxin subfamily alpha-KTx 14), which is composed of 31 amino acid residues and purified from the venom of the Chinese scorpion Buthus martensi Karsch, was characterized using whole-cell patch-clamp recording in rat hippocampal neurons. The three dimensional structure of BmKK2 was determined with two-dimensional NMR spectroscopy and molecular modelling techniques. In solution this toxin adopted a common alpha/beta-motif, but showed distinct local conformation in the loop between alpha-helix and beta-sheet in comparison with typical short-chain scorpion toxins (e.g., CTX and NTX). Also, the alpha helix is shorter and the beta-sheet element is smaller (each strand consisted only two residues). The unusual structural feature of BmKK2 was attributed to the shorter loop between the alpha-helix and beta-sheet and the presence of two consecutive Pro residues at position 21 and 22 in the loop. Moreover, two models of BmKK2/hKv1.3 channel and BmKK2/rSK2 channel complexes were simulated with docking calculations. The results demonstrated the existence of a alpha-mode binding between the toxin and the channels. The model of BmKK2/rSK2 channel complex exhibited favorable contacts both in electrostatic and hydrophobic, including a network of five hydrogen bonds and bigger interface containing seven pairs of inter-residue interactions. In contrast, the model of BmKK2/hKv1.3 channel complex, containing only three pairs of inter-residue interactions, exhibited poor contacts and smaller interface. The results well explained its lower activity towards Kv channel, and predicted that it may prefer a type of SK channel with a narrower entryway as its specific receptor. | ||
- | + | Solution structure of BmKK2, a new potassium channel blocker from the venom of chinese scorpion Buthus martensi Karsch.,Zhang N, Li M, Chen X, Wang Y, Wu G, Hu G, Wu H Proteins. 2004 Jun 1;55(4):835-45. PMID:15146482<ref>PMID:15146482</ref> | |
- | + | ||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
==See Also== | ==See Also== | ||
*[[Potassium channel toxin|Potassium channel toxin]] | *[[Potassium channel toxin|Potassium channel toxin]] | ||
- | + | == References == | |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Mesobuthus martensii]] | [[Category: Mesobuthus martensii]] | ||
- | [[Category: Hu, G | + | [[Category: Hu, G]] |
- | [[Category: Li, M | + | [[Category: Li, M]] |
- | [[Category: Ou, L | + | [[Category: Ou, L]] |
- | [[Category: Wang, Y | + | [[Category: Wang, Y]] |
- | [[Category: Wu, H | + | [[Category: Wu, H]] |
- | [[Category: Zhang, N | + | [[Category: Zhang, N]] |
- | [[Category: Zhang, Q | + | [[Category: Zhang, Q]] |
[[Category: Alpha/beta scaffold]] | [[Category: Alpha/beta scaffold]] | ||
[[Category: Toxin]] | [[Category: Toxin]] |
Revision as of 14:06, 17 December 2014
Solution Structure of BmP07, A Novel Potassium Channel Blocker from Scorpion Buthus martensi Karsch, 15 structures
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Categories: Mesobuthus martensii | Hu, G | Li, M | Ou, L | Wang, Y | Wu, H | Zhang, N | Zhang, Q | Alpha/beta scaffold | Toxin