3idy

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{{STRUCTURE_3idy| PDB=3idy | SCENE= }}
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==Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C2221==
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===Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C2221===
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<StructureSection load='3idy' size='340' side='right' caption='[[3idy]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
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{{ABSTRACT_PUBMED_19965434}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3idy]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IDY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3idx|3idx]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">env ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 Human immunodeficiency virus 1])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3idy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3idy RCSB], [http://www.ebi.ac.uk/pdbsum/3idy PDBsum]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/3idy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The site on HIV-1 gp120 that binds to the CD4 receptor is vulnerable to antibodies. However, most antibodies that interact with this site cannot neutralize HIV-1. To understand the basis of this resistance, we determined co-crystal structures for two poorly neutralizing, CD4-binding site (CD4BS) antibodies, F105 and b13, in complexes with gp120. Both antibodies exhibited approach angles to gp120 similar to those of CD4 and a rare, broadly neutralizing CD4BS antibody, b12. Slight differences in recognition, however, resulted in substantial differences in F105- and b13-bound conformations relative to b12-bound gp120. Modeling and binding experiments revealed these conformations to be poorly compatible with the viral spike. This incompatibility, the consequence of slight differences in CD4BS recognition, renders HIV-1 resistant to all but the most accurately targeted antibodies.
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==About this Structure==
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Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120.,Chen L, Do Kwon Y, Zhou T, Wu X, O'Dell S, Cavacini L, Hessell AJ, Pancera M, Tang M, Xu L, Yang ZY, Zhang MY, Arthos J, Burton DR, Dimitrov DS, Nabel GJ, Posner MR, Sodroski J, Wyatt R, Mascola JR, Kwong PD Science. 2009 Nov 20;326(5956):1123-7. PMID:19965434<ref>PMID:19965434</ref>
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[[3idy]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDY OCA].
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
==See Also==
==See Also==
*[[Antibody|Antibody]]
*[[Antibody|Antibody]]
*[[Gp120|Gp120]]
*[[Gp120|Gp120]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:019965434</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Human immunodeficiency virus 1]]
[[Category: Human immunodeficiency virus 1]]
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[[Category: Arthos, J.]]
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[[Category: Arthos, J]]
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[[Category: Burton, D R.]]
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[[Category: Burton, D R]]
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[[Category: Cavacini, L.]]
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[[Category: Cavacini, L]]
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[[Category: Chen, L.]]
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[[Category: Chen, L]]
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[[Category: Dell, S O.]]
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[[Category: Dell, S O]]
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[[Category: Dimitrov, D S.]]
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[[Category: Dimitrov, D S]]
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[[Category: Hessell, A J.]]
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[[Category: Hessell, A J]]
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[[Category: Kwon, Y D.]]
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[[Category: Kwon, Y D]]
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[[Category: Kwong, P D.]]
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[[Category: Kwong, P D]]
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[[Category: Mascola, J R.]]
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[[Category: Mascola, J R]]
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[[Category: Nabel, G J.]]
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[[Category: Nabel, G J]]
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[[Category: Pancera, M.]]
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[[Category: Pancera, M]]
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[[Category: Posner, M.]]
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[[Category: Posner, M]]
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[[Category: Sodroski, J.]]
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[[Category: Sodroski, J]]
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[[Category: Tang, M.]]
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[[Category: Tang, M]]
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[[Category: Wu, X.]]
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[[Category: Wu, X]]
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[[Category: Wyatt, R.]]
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[[Category: Wyatt, R]]
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[[Category: Xu, L.]]
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[[Category: Xu, L]]
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[[Category: Yang, Z Y.]]
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[[Category: Yang, Z Y]]
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[[Category: Zhang, M Y.]]
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[[Category: Zhang, M Y]]
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[[Category: Zhou, T.]]
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[[Category: Zhou, T]]
[[Category: Aid]]
[[Category: Aid]]
[[Category: Antibody]]
[[Category: Antibody]]

Revision as of 06:16, 18 December 2014

Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C2221

3idy, resolution 3.20Å

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