3vh9
From Proteopedia
(Difference between revisions)
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- | + | ==Crystal structure of Aeromonas proteolytica aminopeptidase complexed with 8-quinolinol== | |
- | + | <StructureSection load='3vh9' size='340' side='right' caption='[[3vh9]], [[Resolution|resolution]] 1.29Å' scene=''> | |
- | + | == Structural highlights == | |
+ | <table><tr><td colspan='2'>[[3vh9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_proteolyticus Vibrio proteolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VH9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VH9 FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HQY:QUINOLIN-8-OL'>HQY</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1lok|1lok]], [[1rtq|1rtq]], [[1amp|1amp]], [[1cp6|1cp6]], [[1txr|1txr]], [[1xry|1xry]], [[2iq6|2iq6]], [[1igb|1igb]], [[1ft7|1ft7]], [[2prq|2prq]], [[2nyq|2nyq]], [[2anp|2anp]], [[3b35|3b35]], [[3b3t|3b3t]], [[3b3s|3b3s]], [[3b3v|3b3v]], [[3b3c|3b3c]], [[3b7i|3b7i]], [[3b3w|3b3w]], [[3fh4|3fh4]], [[2dea|2dea]]</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Bacterial_leucyl_aminopeptidase Bacterial leucyl aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.10 3.4.11.10] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vh9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vh9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vh9 RCSB], [http://www.ebi.ac.uk/pdbsum/3vh9 PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The selective inhibition of an aminopeptidase from Aeromonas proteolytica (AAP), a dinuclear Zn(2+) hydrolase, by 8-quinolinol (8-hydroxyquinoline, 8-HQ) derivatives is reported. We previously reported on the preparation of 8-HQ-pendant cyclens as Zn(2+) fluorophores (cyclen is 1,4,7,10-tetraazacyclododecane), in which the nitrogen and phenolate of the 8-HQ units (as well as the four nitrogens of cyclen) bind to Zn(2+) in a bidentate manner to form very stable Zn(2+) complexes at neutral pH (K (d) = 8-50 fM at pH 7.4). On the basis of this finding, it was hypothesized that 8-HQ derivatives have the potential to function as specific inhibitors of Zn(2+) enzymes, especially dinuclear Zn(2+) hydrolases. Assays of 8-HQ derivatives as inhibitors were performed against commercially available dinuclear Zn(2+) enzymes such as AAP and alkaline phosphatase. 8-HQ and the 5-substituted 8-HQ derivatives were found to be competitive inhibitors of AAP with inhibition constants of 0.16-29 muM at pH 8.0. The nitrogen at the 1-position and the hydroxide at the 8-position of 8-HQ were found to be essential for the inhibition of AAP. Fluorescence titrations of these drugs with AAP and an X-ray crystal structure analysis of an AAP-8-HQ complex (1.3-A resolution) confirmed that 8-HQ binds to AAP in the "Pyr-out" mode, in which the hydroxide anion of 8-HQ bridges two Zn(2+) ions (Zn1 and Zn2) in the active site of AAP and the nitrogen atom of 8-HQ coordinates to Zn1 (Protein Data Bank code 3VH9). | ||
- | + | Potent inhibition of dinuclear zinc(II) peptidase, an aminopeptidase from Aeromonas proteolytica, by 8-quinolinol derivatives: inhibitor design based on Zn(2+) fluorophores, kinetic, and X-ray crystallographic study.,Hanaya K, Suetsugu M, Saijo S, Yamato I, Aoki S J Biol Inorg Chem. 2012 Feb 5. PMID:22311113<ref>PMID:22311113</ref> | |
- | + | ||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
==See Also== | ==See Also== | ||
*[[Aminopeptidase|Aminopeptidase]] | *[[Aminopeptidase|Aminopeptidase]] | ||
*[[Journal:JBIC:15|Journal:JBIC:15]] | *[[Journal:JBIC:15|Journal:JBIC:15]] | ||
- | + | == References == | |
- | == | + | <references/> |
- | < | + | __TOC__ |
+ | </StructureSection> | ||
[[Category: Bacterial leucyl aminopeptidase]] | [[Category: Bacterial leucyl aminopeptidase]] | ||
[[Category: Vibrio proteolyticus]] | [[Category: Vibrio proteolyticus]] | ||
- | [[Category: Aoki, S | + | [[Category: Aoki, S]] |
- | [[Category: Hanaya, K | + | [[Category: Hanaya, K]] |
- | [[Category: Kobayashi, K | + | [[Category: Kobayashi, K]] |
- | [[Category: Saijo, S | + | [[Category: Saijo, S]] |
- | [[Category: Suetsugu, M | + | [[Category: Suetsugu, M]] |
- | [[Category: Yamato, I | + | [[Category: Yamato, I]] |
[[Category: 8-quinolinol]] | [[Category: 8-quinolinol]] | ||
[[Category: Aminopeptidase]] | [[Category: Aminopeptidase]] | ||
[[Category: Dinuclear zinc hydrolase]] | [[Category: Dinuclear zinc hydrolase]] | ||
[[Category: Hydrolase-hydrolase inhibitor complex]] | [[Category: Hydrolase-hydrolase inhibitor complex]] |
Revision as of 08:37, 18 December 2014
Crystal structure of Aeromonas proteolytica aminopeptidase complexed with 8-quinolinol
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