2luu

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{{STRUCTURE_2luu| PDB=2luu | SCENE= }}
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==NMR solution structure of midkine-b, mdkb==
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===NMR solution structure of midkine-b, mdkb===
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<StructureSection load='2luu' size='340' side='right' caption='[[2luu]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
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{{ABSTRACT_PUBMED_23418741}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2luu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LUU FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1mkn|1mkn]], [[1mkc|1mkc]], [[2lut|2lut]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mdkb, mdk2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Danio rerio])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2luu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2luu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2luu RCSB], [http://www.ebi.ac.uk/pdbsum/2luu PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Midkine is a heparin-binding di-domain growth factor, implicated in many biological processes as diverse as angiogenesis, neurogenesis and tumorigenesis. Elevated midkine levels reflect poor prognosis for many carcinomas, yet the molecular and cellular mechanisms orchestrating its activity remain unclear. At the present time, the individual structures of isolated half domains of human midkine are known and its functionally active C-terminal half domain remains a popular therapeutic target. In the present study, we determined the structure of full-length zebrafish midkine and show that it interacts with fondaparinux (a synthetic highly sulfated pentasaccharide) and natural heparin through a previously uncharacterized, but highly conserved, hinge region. Mutating six consecutive residues in the conserved hinge to glycine strongly abates heparin binding and midkine embryogenic activity. In contrast with previous in vitro studies, we found that the isolated C-terminal half domain is not active in vivo in embryos. Instead, we have demonstrated that the N-terminal half domain is needed to enhance heparin binding and mediate midkine embryogenic activity surprisingly in both heparin-dependent and -independent manners. Our findings provide new insights into the structural features of full-length midkine relevant for embryogenesis, and unravel additional therapeutic routes targeting the N-terminal half domain and conserved hinge.
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==About this Structure==
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Structure-function analysis of full-length midkine reveals novel residues important for heparin binding and zebrafish embryogenesis.,Lim J, Yao S, Graf M, Winkler C, Yang D Biochem J. 2013 May 1;451(3):407-15. doi: 10.1042/BJ20121622. PMID:23418741<ref>PMID:23418741</ref>
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[[2luu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUU OCA].
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Danio rerio]]
[[Category: Danio rerio]]
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[[Category: Lim, J.]]
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[[Category: Lim, J]]
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[[Category: Meng, D.]]
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[[Category: Meng, D]]
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[[Category: Yang, D.]]
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[[Category: Yang, D]]
[[Category: Beta sheet]]
[[Category: Beta sheet]]
[[Category: Disulfide bond]]
[[Category: Disulfide bond]]
[[Category: Hormone]]
[[Category: Hormone]]
[[Category: Independent half-domain]]
[[Category: Independent half-domain]]

Revision as of 11:53, 18 December 2014

NMR solution structure of midkine-b, mdkb

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