1pud
From Proteopedia
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| - | [[Image:1pud.gif|left|200px]] | + | [[Image:1pud.gif|left|200px]] |
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| - | '''TRNA-GUANINE TRANSGLYCOSYLASE''' | + | {{Structure |
| + | |PDB= 1pud |SIZE=350|CAPTION= <scene name='initialview01'>1pud</scene>, resolution 1.85Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=ZN:ZINC ION'>ZN</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Queuine_tRNA-ribosyltransferase Queuine tRNA-ribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.29 2.4.2.29] | ||
| + | |GENE= TGT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=542 Zymomonas mobilis]) | ||
| + | }} | ||
| + | |||
| + | '''TRNA-GUANINE TRANSGLYCOSYLASE''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1PUD is a [ | + | 1PUD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Zymomonas_mobilis Zymomonas mobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PUD OCA]. |
==Reference== | ==Reference== | ||
| - | Crystal structure of tRNA-guanine transglycosylase: RNA modification by base exchange., Romier C, Reuter K, Suck D, Ficner R, EMBO J. 1996 Jun 3;15(11):2850-7. PMID:[http:// | + | Crystal structure of tRNA-guanine transglycosylase: RNA modification by base exchange., Romier C, Reuter K, Suck D, Ficner R, EMBO J. 1996 Jun 3;15(11):2850-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8654383 8654383] |
[[Category: Queuine tRNA-ribosyltransferase]] | [[Category: Queuine tRNA-ribosyltransferase]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: trna-modifying enzyme]] | [[Category: trna-modifying enzyme]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:29:07 2008'' |
Revision as of 11:29, 20 March 2008
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| , resolution 1.85Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Gene: | TGT (Zymomonas mobilis) | ||||||
| Activity: | Queuine tRNA-ribosyltransferase, with EC number 2.4.2.29 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
TRNA-GUANINE TRANSGLYCOSYLASE
Overview
tRNA-guanine transglycosylases (TGT) are enzymes involved in the modification of the anticodon of tRNAs specific for Asn, Asp, His and Tyr, leading to the replacement of guanine-34 at the wobble position by the hypermodified base queuine. In prokaryotes TGT catalyzes the exchange of guanine-34 with the queuine (.)precursor 7-aminomethyl-7-deazaguanine (preQ1). The crystal structure of TGT from Zymomonas mobilis was solved by multiple isomorphous replacement and refined to a crystallographic R-factor of 19% at 1.85 angstrom resolution. The structure consists of an irregular (beta/alpha)8-barrel with a tightly attached C-terminal zinc-containing subdomain. The packing of the subdomain against the barrel is mediated by an alpha-helix, located close to the C-terminus, which displaces the eighth helix of the barrel. The structure of TGT in complex with preQ1 suggests a binding mode for tRNA where the phosphate backbone interacts with the zinc subdomain and the U33G34U35 sequence is recognized by the barrel. This model for tRNA binding is consistent with a base exchange mechanism involving a covalent tRNA-enzyme intermediate. This structure is the first example of a (beta/alpha)-barrel protein interacting specifically with a nucleic acid.
About this Structure
1PUD is a Single protein structure of sequence from Zymomonas mobilis. Full crystallographic information is available from OCA.
Reference
Crystal structure of tRNA-guanine transglycosylase: RNA modification by base exchange., Romier C, Reuter K, Suck D, Ficner R, EMBO J. 1996 Jun 3;15(11):2850-7. PMID:8654383
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