3ny0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ny0" [edit=sysop:move=sysop])
Line 1: Line 1:
-
{{STRUCTURE_3ny0| PDB=3ny0 | SCENE= }}
+
==Crystal Structure of UreE from Helicobacter pylori (Ni2+ bound form)==
-
===Crystal Structure of UreE from Helicobacter pylori (Ni2+ bound form)===
+
<StructureSection load='3ny0' size='340' side='right' caption='[[3ny0]], [[Resolution|resolution]] 3.09&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_20681615}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3ny0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NY0 FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3l9z|3l9z]], [[3la0|3la0]], [[3nxz|3nxz]]</td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HP_0070, ureE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=210 Helicobacter pylori])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ny0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ny0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ny0 RCSB], [http://www.ebi.ac.uk/pdbsum/3ny0 PDBsum]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/3ny0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The crystal structure of the urease maturation protein UreE from Helicobacter pylori has been determined in its apo form at 2.1 A resolution, bound to Cu(2+) at 2.7 A resolution, and bound to Ni(2+) at 3.1 A resolution. Apo UreE forms dimers, while the metal-bound enzymes are arranged as tetramers that consist of a dimer of dimers associated around the metal ion through coordination by His102 residues from each subunit of the tetramer. Comparison of independent subunits from different crystal forms indicates changes in the relative arrangement of the N- and C-terminal domains in response to metal binding. The improved ability of engineered versions of UreE containing hexahistidine sequences at either the N-terminal or C-terminal end to provide Ni(2+) for the final metal sink (urease) is eliminated in the H102A version. Therefore, the ability of the improved Ni(2+)-binding versions to deliver more nickel is likely an effect of an increased local concentration of metal ions that can rapidly replenish transferred ions bound to His102.
-
==Function==
+
Crystal Structures of Apo and Metal-Bound Forms of the UreE Protein from Helicobacter pylori: Role of Multiple Metal Binding Sites .,Shi R, Munger C, Asinas A, Benoit SL, Miller E, Matte A, Maier RJ, Cygler M Biochemistry. 2010 Aug 24;49(33):7080-8. PMID:20681615<ref>PMID:20681615</ref>
-
[[http://www.uniprot.org/uniprot/UREE_HELPY UREE_HELPY]] Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly (By similarity).
+
-
==About this Structure==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[3ny0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NY0 OCA].
+
</div>
-
==Reference==
+
==See Also==
-
<ref group="xtra">PMID:020681615</ref><references group="xtra"/><references/>
+
*[[Urease accessory protein|Urease accessory protein]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Helicobacter pylori]]
[[Category: Helicobacter pylori]]
-
[[Category: Assinas, A.]]
+
[[Category: Assinas, A]]
-
[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]
+
[[Category: Structural genomic]]
-
[[Category: Cygler, M.]]
+
[[Category: Cygler, M]]
-
[[Category: Matte, A.]]
+
[[Category: Matte, A]]
-
[[Category: Munger, C.]]
+
[[Category: Munger, C]]
-
[[Category: Shi, R.]]
+
[[Category: Shi, R]]
[[Category: Bsgi]]
[[Category: Bsgi]]
[[Category: Metal binding protein]]
[[Category: Metal binding protein]]
-
[[Category: Montreal-kingston bacterial structural genomics initiative]]
 
-
[[Category: Structural genomic]]
 
[[Category: Urease maturation protein]]
[[Category: Urease maturation protein]]

Revision as of 06:42, 19 December 2014

Crystal Structure of UreE from Helicobacter pylori (Ni2+ bound form)

3ny0, resolution 3.09Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools