3nt8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_3nt8| PDB=3nt8 | SCENE= }}
+
==Crystal Structure of Na-ASP-1==
-
===Crystal Structure of Na-ASP-1===
+
<StructureSection load='3nt8' size='340' side='right' caption='[[3nt8]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_21543848}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3nt8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Necator_americanus Necator americanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NT8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NT8 FirstGlance]. <br>
 +
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1u53|1u53]], [[1smb|1smb]], [[1cfe|1cfe]], [[1xx5|1xx5]]</td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">asp1, Human hookworm 51031 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=51031 Necator americanus])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nt8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nt8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3nt8 RCSB], [http://www.ebi.ac.uk/pdbsum/3nt8 PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Major proteins secreted by the infective larval stage hookworms upon host entry include Ancylostoma secreted proteins (ASPs), which are characterized by one or two CAP (cysteine-rich secretory protein/antigen 5/pathogenesis related-1) domains. The CAP domain has been reported in diverse phylogenetically unrelated proteins, but has no confirmed function. The first structure of a two-CAP-domain protein, Na-ASP-1, from the major human hookworm parasite Necator americanus was refined to a resolution limit of 2.2 A. The structure was solved by molecular replacement (MR) using Na-ASP-2, a one-CAP-domain ASP, as the search model. The correct MR solution could only be obtained by truncating the polyalanine model of Na-ASP-2 and removing several loops. The structure reveals two CAP domains linked by an extended loop. Overall, the carboxyl-terminal CAP domain is more similar to Na-ASP-2 than to the amino-terminal CAP domain. A large central cavity extends from the amino-terminal CAP domain to the carboxyl-terminal CAP domain, encompassing the putative CAP-binding cavity. The putative CAP-binding cavity is a characteristic cavity in the carboxyl-terminal CAP domain that contains a His and Glu pair. These residues are conserved in all single-CAP-domain proteins, but are absent in the amino-terminal CAP domain. The conserved His residues are oriented such that they appear to be capable of directly coordinating a zinc ion as observed for CAP proteins from reptile venoms. This first structure of a two-CAP-domain ASP can serve as a template for homology modeling of other two-CAP-domain proteins.
-
==About this Structure==
+
Structure of a two-CAP-domain protein from the human hookworm parasite Necator americanus.,Asojo OA Acta Crystallogr D Biol Crystallogr. 2011 May;67(Pt 5):455-62. Epub 2011, Apr 7. PMID:21543848<ref>PMID:21543848</ref>
-
[[3nt8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Necator_americanus Necator americanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NT8 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:021543848</ref><references group="xtra"/><references/>
+
</div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Necator americanus]]
[[Category: Necator americanus]]
-
[[Category: Asojo, O A.]]
+
[[Category: Asojo, O A]]
[[Category: Cap domain]]
[[Category: Cap domain]]
[[Category: Cysteine-rich secretory protein]]
[[Category: Cysteine-rich secretory protein]]
[[Category: Immune system]]
[[Category: Immune system]]
[[Category: Pathogenesis related-1 protein]]
[[Category: Pathogenesis related-1 protein]]

Revision as of 06:47, 19 December 2014

Crystal Structure of Na-ASP-1

3nt8, resolution 2.20Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools