3vp9

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{{STRUCTURE_3vp9| PDB=3vp9 | SCENE= }}
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==Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p mutant==
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===Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p mutant===
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<StructureSection load='3vp9' size='340' side='right' caption='[[3vp9]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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{{ABSTRACT_PUBMED_22707714}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3vp9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_s288c Saccharomyces cerevisiae s288c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VP9 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DIO:1,4-DIETHYLENE+DIOXIDE'>DIO</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vp8|3vp8]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TUP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Saccharomyces cerevisiae S288c])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vp9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vp9 RCSB], [http://www.ebi.ac.uk/pdbsum/3vp9 PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The yeast Cyc8p-Tup1p protein complex is a general transcriptional corepressor of genes involved in many different physiological processes. Herein, we present the crystal structure of the Tup1p N-terminal domain (residues 1-92), essential for Tup1p self-assembly and interaction with Cyc8p. This domain tetramerizes to form a novel antiparallel four-helix bundle. Coiled coil interactions near the helical ends hold each dimer together, whereas interdimeric association involves only two sets of two residues located toward the chain centers. A mutagenesis study confirmed that the nonpolar residues responsible for the association of the protomers as dimers are also required for transcriptional repression. An additional structural study demonstrated that the domain containing an Leu(62) --&gt; Arg mutation that had been shown not to bind Cyc8p exhibits an altered structure, distinct from the wild type. This altered structure explains why the mutant cannot bind Cyc8p. The data presented herein highlight the importance of the architecture of the Tup1p N-terminal domain for self-association.
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==Function==
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Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications.,Matsumura H, Kusaka N, Nakamura T, Tanaka N, Sagegami K, Uegaki K, Inoue T, Mukai Y J Biol Chem. 2012 Aug 3;287(32):26528-38. Epub 2012 Jun 15. PMID:22707714<ref>PMID:22707714</ref>
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[[http://www.uniprot.org/uniprot/TUP1_YEAST TUP1_YEAST]] Acts as component of the CYC8-TUP1 corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes including heme-regulated and catabolite repressed genes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors, like MATALPHA2, MIG1, RFX1 and SKO1. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex.<ref>PMID:2247069</ref> <ref>PMID:11069890</ref> <ref>PMID:10722672</ref> <ref>PMID:11230135</ref> <ref>PMID:11172717</ref> <ref>PMID:11784848</ref> <ref>PMID:14665463</ref>
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[3vp9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_s288c Saccharomyces cerevisiae s288c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VP9 OCA].
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</div>
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:022707714</ref><references group="xtra"/><references/>
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__TOC__
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</StructureSection>
[[Category: Saccharomyces cerevisiae s288c]]
[[Category: Saccharomyces cerevisiae s288c]]
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[[Category: Inoue, T.]]
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[[Category: Inoue, T]]
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[[Category: Kusaka, N.]]
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[[Category: Kusaka, N]]
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[[Category: Matsumura, H.]]
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[[Category: Matsumura, H]]
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[[Category: Mukai, Y.]]
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[[Category: Mukai, Y]]
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[[Category: Nakamura, T.]]
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[[Category: Nakamura, T]]
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[[Category: Sagegami, K.]]
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[[Category: Sagegami, K]]
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[[Category: Tanaka, N.]]
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[[Category: Tanaka, N]]
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[[Category: Uegaki, K.]]
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[[Category: Uegaki, K]]
[[Category: Four helix bundle]]
[[Category: Four helix bundle]]
[[Category: Transcription]]
[[Category: Transcription]]

Revision as of 06:50, 21 December 2014

Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p mutant

3vp9, resolution 1.80Å

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