3t1w

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{{STRUCTURE_3t1w| PDB=3t1w | SCENE= }}
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==Structure of the four-domain fragment Fn7B89 of oncofetal fibronectin==
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===Structure of the four-domain fragment Fn7B89 of oncofetal fibronectin===
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<StructureSection load='3t1w' size='340' side='right' caption='[[3t1w]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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{{ABSTRACT_PUBMED_22442152}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3t1w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T1W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3T1W FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1fnf|1fnf]], [[2gee|2gee]], [[2fnb|2fnb]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DKFZp686O12165, NP_997647 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3t1w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t1w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3t1w RCSB], [http://www.ebi.ac.uk/pdbsum/3t1w PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The type III extra-domain B (ED-B) is specifically spliced into fibronectin (Fn) during embryogenesis and neoangiogenesis, including many cancers. The x-ray structure of the recombinant four-domain fragment Fn(III)7B89 reveals a tightly associated, extended head-to-tail dimer, which is stabilized via pair-wise shape and charge complementarity. A tendency toward ED-B-dependent dimer formation in solution was supported by size exclusion chromatography and analytical ultracentrifugation. When amending the model with the known three-dimensional structure of the Fn(III)10 domain, its RGD loop as well as the adhesion synergy region in Fn(III)9-10 become displayed on the same face of the dimer; this should allow simultaneous binding of at least two integrins and, thus, receptor clustering on the cell surface and intracellular signaling. Insertion of ED-B appears to stabilize overall head-to-tail dimerization of two separate Fn chains, which, together with alternating homodimer formation via disulfide bridges at the C-terminal Fn tail, should lead to the known macromolecular fibril formation.
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==About this Structure==
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Extra-domain B in Oncofetal Fibronectin Structurally Promotes Fibrillar Head-to-tail Dimerization of Extracellular Matrix Protein.,Schiefner A, Gebauer M, Skerra A J Biol Chem. 2012 May 18;287(21):17578-88. Epub 2012 Mar 22. PMID:22442152<ref>PMID:22442152</ref>
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[[3t1w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T1W OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:022442152</ref><references group="xtra"/><references/>
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</div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Schiefner, A.]]
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[[Category: Schiefner, A]]
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[[Category: Skerra, A.]]
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[[Category: Skerra, A]]
[[Category: Angiogenesis]]
[[Category: Angiogenesis]]
[[Category: Ed-b]]
[[Category: Ed-b]]

Revision as of 07:33, 21 December 2014

Structure of the four-domain fragment Fn7B89 of oncofetal fibronectin

3t1w, resolution 2.40Å

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