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3znz

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{{STRUCTURE_3znz| PDB=3znz | SCENE= }}
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==Crystal structure of OTULIN OTU domain (C129A) in complex with Met1- di ubiquitin==
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===Crystal structure of OTULIN OTU domain (C129A) in complex with Met1- di ubiquitin===
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<StructureSection load='3znz' size='340' side='right' caption='[[3znz]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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{{ABSTRACT_PUBMED_23746843}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3znz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZNZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZNZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3znv|3znv]], [[3znx|3znx]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquitinyl_hydrolase_1 Ubiquitinyl hydrolase 1], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.12 3.4.19.12] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3znz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3znz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3znz RCSB], [http://www.ebi.ac.uk/pdbsum/3znz PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The linear ubiquitin (Ub) chain assembly complex (LUBAC) is an E3 ligase that specifically assembles Met1-linked (also known as linear) Ub chains that regulate nuclear factor kappaB (NF-kappaB) signaling. Deubiquitinases (DUBs) are key regulators of Ub signaling, but a dedicated DUB for Met1 linkages has not been identified. Here, we reveal a previously unannotated human DUB, OTULIN (also known as FAM105B), which is exquisitely specific for Met1 linkages. Crystal structures of the OTULIN catalytic domain in complex with diubiquitin reveal Met1-specific Ub-binding sites and a mechanism of substrate-assisted catalysis in which the proximal Ub activates the catalytic triad of the protease. Mutation of Ub Glu16 inhibits OTULIN activity by reducing kcat 240-fold. OTULIN overexpression or knockdown affects NF-kappaB responses to LUBAC, TNFalpha, and poly(I:C) and sensitizes cells to TNFalpha-induced cell death. We show that OTULIN binds LUBAC and that overexpression of OTULIN prevents TNFalpha-induced NEMO association with ubiquitinated RIPK1. Our data suggest that OTULIN regulates Met1-polyUb signaling.
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==About this Structure==
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OTULIN Antagonizes LUBAC Signaling by Specifically Hydrolyzing Met1-Linked Polyubiquitin.,Keusekotten K, Elliott PR, Glockner L, Fiil BK, Damgaard RB, Kulathu Y, Wauer T, Hospenthal MK, Gyrd-Hansen M, Krappmann D, Hofmann K, Komander D Cell. 2013 Jun 6;153(6):1312-26. doi: 10.1016/j.cell.2013.05.014. PMID:23746843<ref>PMID:23746843</ref>
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[[3znz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZNZ OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:023746843</ref><references group="xtra"/><references/>
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</div>
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==See Also==
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*[[Ubiquitin|Ubiquitin]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Ubiquitinyl hydrolase 1]]
[[Category: Ubiquitinyl hydrolase 1]]
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[[Category: Elliott, P R.]]
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[[Category: Elliott, P R]]
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[[Category: Glockner, L.]]
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[[Category: Glockner, L]]
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[[Category: Hofmann, K.]]
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[[Category: Hofmann, K]]
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[[Category: Keusekotten, K.]]
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[[Category: Keusekotten, K]]
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[[Category: Komander, D.]]
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[[Category: Komander, D]]
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[[Category: Krappmann, D.]]
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[[Category: Krappmann, D]]
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[[Category: Kulathu, Y.]]
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[[Category: Kulathu, Y]]
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[[Category: Wauer, T.]]
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[[Category: Wauer, T]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]

Revision as of 09:36, 21 December 2014

Crystal structure of OTULIN OTU domain (C129A) in complex with Met1- di ubiquitin

3znz, resolution 1.90Å

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