3zi0

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{{STRUCTURE_3zi0| PDB=3zi0 | SCENE= }}
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==Structure of Mycobacterium tuberculosis DXR in complex with a fosmidomycin analogue==
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===Structure of Mycobacterium tuberculosis DXR in complex with a fosmidomycin analogue===
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<StructureSection load='3zi0' size='340' side='right' caption='[[3zi0]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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{{ABSTRACT_PUBMED_23819803}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3zi0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_h37rv Mycobacterium tuberculosis h37rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZI0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZI0 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FM8:[(1S)-1-(3,4-DICHLOROPHENYL)-3-{HYDROXY[2-(1H-1,2,4-TRIAZOL-1-YLMETHYL)BENZOYL]AMINO}PROPYL]PHOSPHONIC+ACID'>FM8</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3zhx|3zhx]], [[3zhy|3zhy]], [[3zhz|3zhz]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/1-deoxy-D-xylulose-5-phosphate_reductoisomerase 1-deoxy-D-xylulose-5-phosphate reductoisomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.267 1.1.1.267] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zi0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zi0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zi0 RCSB], [http://www.ebi.ac.uk/pdbsum/3zi0 PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The antimalarial compound fosmidomycin targets DXR, the enzyme that catalyzes the first committed step in the MEP pathway, producing the essential isoprenoid precursors, isopentenyl diphosphate and dimethylallyl diphosphate. The MEP pathway is used by a number of pathogens, including Mycobacterium tuberculosis and apicomplexan parasites, and differs from the classical mevalonate pathway that is essential in humans. Using a structure-based approach, we designed a number of analogues of fosmidomycin, including a series that are substituted in both the Calpha and the hydroxamate positions. The latter proved to be a stable framework for the design of inhibitors that extend from the polar and cramped (and so not easily druggable) substrate-binding site and can, for the first time, bridge the substrate and cofactor binding sites. A number of these compounds are more potent than fosmidomycin in terms of killing Plasmodium falciparum in an in vitro assay; the best has an IC50 of 40 nM.
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==About this Structure==
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DXR inhibition by potent mono- and disubstituted fosmidomycin analogues.,Jansson AM, Wieckowska A, Bjorkelid C, Yahiaoui S, Sooriyaarachchi S, Lindh M, Bergfors T, Dharavath S, Desroses M, Suresh S, Andaloussi M, Nikhil R, Sreevalli S, Srinivasa BR, Larhed M, Jones TA, Karlen A, Mowbray SL J Med Chem. 2013 Aug 8;56(15):6190-9. doi: 10.1021/jm4006498. Epub 2013 Jul 17. PMID:23819803<ref>PMID:23819803</ref>
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[[3zi0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_h37rv Mycobacterium tuberculosis h37rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZI0 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:023819803</ref><references group="xtra"/><references/>
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</div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: 1-deoxy-D-xylulose-5-phosphate reductoisomerase]]
[[Category: 1-deoxy-D-xylulose-5-phosphate reductoisomerase]]
[[Category: Mycobacterium tuberculosis h37rv]]
[[Category: Mycobacterium tuberculosis h37rv]]
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[[Category: Bergfors, T.]]
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[[Category: Bergfors, T]]
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[[Category: Bjorkelid, C.]]
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[[Category: Bjorkelid, C]]
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[[Category: Jansson, A M.]]
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[[Category: Jansson, A M]]
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[[Category: Jones, T A.]]
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[[Category: Jones, T A]]
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[[Category: Mowbray, S L.]]
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[[Category: Mowbray, S L]]
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[[Category: Unge, T.]]
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[[Category: Unge, T]]
[[Category: Doxp/mep pathway]]
[[Category: Doxp/mep pathway]]
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[[Category: ISPC]]
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[[Category: ISPC, Israel Structural Proteomics Center]]
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]
[[Category: Rv2870c]]
[[Category: Rv2870c]]
[[Category: Tuberculosis]]
[[Category: Tuberculosis]]

Revision as of 09:55, 21 December 2014

Structure of Mycobacterium tuberculosis DXR in complex with a fosmidomycin analogue

3zi0, resolution 1.90Å

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