4ivn

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{{STRUCTURE_4ivn| PDB=4ivn | SCENE= }}
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==The Vibrio vulnificus NanR protein complexed with ManNAc-6P==
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===The Vibrio vulnificus NanR protein complexed with ManNAc-6P===
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<StructureSection load='4ivn' size='340' side='right' caption='[[4ivn]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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{{ABSTRACT_PUBMED_23832782}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4ivn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibvy Vibvy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IVN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IVN FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMX:2-(ACETYLAMINO)-2-DEOXY-6-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE'>BMX</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ivn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ivn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ivn RCSB], [http://www.ebi.ac.uk/pdbsum/4ivn PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Pathogenic and commensal bacteria that experience limited nutrient availability in their host have evolved sophisticated systems to catabolize the mucin sugar N-acetylneuraminic acid, thereby facilitating their survival and colonization. The correct function of the associated catabolic machinery is particularly crucial for the pathogenesis of enteropathogenic bacteria during infection, although the molecular mechanisms involved with the regulation of the catabolic machinery are unknown. This study reports the complex structure of NanR, a repressor of the N-acetylneuraminate (nan) genes responsible for N-acetylneuraminic acid catabolism, and its regulatory ligand, N-acetylmannosamine 6-phosphate (ManNAc-6P), in the human pathogenic bacterium Vibrio vulnificus. Structural studies combined with electron microscopic, biochemical, and in vivo analysis demonstrated that NanR forms a dimer in which the two monomers create an arched tunnel-like DNA-binding space, which contains positively charged residues that interact with the nan promoter. The interaction between the NanR dimer and DNA is alleviated by the ManNAc-6P-mediated relocation of residues in the ligand-binding domain of NanR, which subsequently relieves the repressive effect of NanR and induces the transcription of the nan genes. Survival studies in which mice were challenged with a ManNAc-6P-binding-defective mutant strain of V. vulnificus demonstrated that this relocation of NanR residues is critical for V. vulnificus pathogenesis. In summary, this study presents a model of the mechanism that regulates sialic acid catabolism via NanR in V. vulnificus.
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==About this Structure==
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Structural insights into the regulation of sialic acid catabolism by the Vibrio vulnificus transcriptional repressor NanR.,Hwang J, Kim BS, Jang SY, Lim JG, You DJ, Jung HS, Oh TK, Lee JO, Choi SH, Kim MH Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):E2829-37. doi:, 10.1073/pnas.1302859110. Epub 2013 Jul 5. PMID:23832782<ref>PMID:23832782</ref>
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[[4ivn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibvy Vibvy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IVN OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:023832782</ref><references group="xtra"/><references/>
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</div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Vibvy]]
[[Category: Vibvy]]
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[[Category: Hwang, J.]]
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[[Category: Hwang, J]]
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[[Category: Kim, M H.]]
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[[Category: Kim, M H]]
[[Category: Isomerase fold]]
[[Category: Isomerase fold]]
[[Category: Nan operon regulator for sialic acid catabolism]]
[[Category: Nan operon regulator for sialic acid catabolism]]
[[Category: Transcription regulator]]
[[Category: Transcription regulator]]

Revision as of 12:14, 21 December 2014

The Vibrio vulnificus NanR protein complexed with ManNAc-6P

4ivn, resolution 1.90Å

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