4ilv

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{{STRUCTURE_4ilv| PDB=4ilv | SCENE= }}
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==Structure of the dioxygenase domain of SACTE_2871, a novel dioxygenase carbohydrate-binding protein fusion from the cellulolytic bacterium Streptomyces sp. SirexAA-E==
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===Structure of the dioxygenase domain of SACTE_2871, a novel dioxygenase carbohydrate-binding protein fusion from the cellulolytic bacterium Streptomyces sp. SirexAA-E===
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<StructureSection load='4ilv' size='340' side='right' caption='[[4ilv]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
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{{ABSTRACT_PUBMED_23653358}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4ilv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_sp._sirexaa-e Streptomyces sp. sirexaa-e]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ILV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ILV FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ilt|4ilt]], [[4ily|4ily]], [[4im1|4im1]], [[4im4|4im4]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SACTE_2871 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=862751 Streptomyces sp. SirexAA-E])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ilv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ilv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ilv RCSB], [http://www.ebi.ac.uk/pdbsum/4ilv PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Streptomyces sp. SirexAA-E is a highly cellulolytic bacterium isolated from an insect/microbe symbiotic community. When grown on lignin-containing biomass, it secretes SACTE_2871, an aromatic ring dioxygenase domain fused to a family 5/12 carbohydrate-binding module (CBM 5/12). Here we present structural and catalytic studies of this novel fusion enzyme, thus providing insight into its function. The dioxygenase domain has the core beta sandwich fold typical of this enzyme family but lacks a dimerization domain observed in other intradiol dioxygenases. Consequently, the X-ray structure shows that the enzyme is monomeric and the Fe(III)-containing active site is exposed to solvent in a shallow depression on a planar surface. Purified SACTE_2871 catalyzes the O2-dependent intradiol cleavage of catecholic compounds from lignin biosynthetic pathways, but not their methoxylated derivatives. Binding studies show that SACTE_2871 binds synthetic lignin polymers and chitin through the interactions of the CBM 5/12 domain, representing a new binding specificity for this fold family. Based on its unique structural features and functional properties, we propose that SACTE_2871 contributes to the invasive nature of the insect/microbial community by destroying precursors needed by the plant for de novo lignin biosynthesis as part of its natural wounding response.
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==About this Structure==
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Fusion of dioxygenase and lignin-binding domains in a novel secreted enzyme from cellulolytic Streptomyces sp. SirexAA-E.,Bianchetti CM, Harmann CH, Takasuka TE, Hura GL, Dyer K, Fox BG J Biol Chem. 2013 May 7. PMID:23653358<ref>PMID:23653358</ref>
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[[4ilv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_sp._sirexaa-e Streptomyces sp. sirexaa-e]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ILV OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:023653358</ref><references group="xtra"/><references/>
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</div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Streptomyces sp. sirexaa-e]]
[[Category: Streptomyces sp. sirexaa-e]]
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[[Category: Bergeman, L F.]]
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[[Category: Bergeman, L F]]
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[[Category: Bianchetti, C M.]]
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[[Category: Bianchetti, C M]]
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[[Category: Fox, B G.]]
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[[Category: Fox, B G]]
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[[Category: Harmann, C H.]]
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[[Category: Harmann, C H]]
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[[Category: Takasuka, T E.]]
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[[Category: Takasuka, T E]]
[[Category: Carbohydrate binding domain]]
[[Category: Carbohydrate binding domain]]
[[Category: Intradiol dioxygenase]]
[[Category: Intradiol dioxygenase]]
[[Category: Iron center]]
[[Category: Iron center]]
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]

Revision as of 12:46, 21 December 2014

Structure of the dioxygenase domain of SACTE_2871, a novel dioxygenase carbohydrate-binding protein fusion from the cellulolytic bacterium Streptomyces sp. SirexAA-E

4ilv, resolution 2.06Å

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