4hvk
From Proteopedia
(Difference between revisions)
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- | + | ==Crystal structure and functional studies of an unusual L-cysteine desulfurase from Archaeoglobus fulgidus.== | |
- | + | <StructureSection load='4hvk' size='340' side='right' caption='[[4hvk]], [[Resolution|resolution]] 1.43Å' scene=''> | |
- | + | == Structural highlights == | |
+ | <table><tr><td colspan='2'>[[4hvk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HVK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HVK FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PMP:4-DEOXY-4-AMINOPYRIDOXAL-5-PHOSPHATE'>PMP</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4eb5|4eb5]], [[4eb7|4eb7]]</td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AF0564, AF_0564, iscS2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 Archaeoglobus fulgidus DSM 4304])</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cysteine_desulfurase Cysteine desulfurase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.1.7 2.8.1.7] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hvk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hvk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4hvk RCSB], [http://www.ebi.ac.uk/pdbsum/4hvk PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | l-Cysteine desulfurase IscS and scaffold IscU proteins are universally involved in Fe/S cluster synthesis. The Archaeoglobus fulgidus (Af) genome encodes proteins having a high degree of primary structure similarity to IscS and IscU from other organisms. However, AfIscS is unusual because it lacks the active site lysine residue that normally forms an internal Schiff base with pyridoxal-phosphate (PLP) and serves as a base during catalysis. Our as-isolated recombinant AfIscS contains pyridoxamine phosphate (PMP) instead of the expected PLP and lacks desulfurase activity. We have solved its structure to 1.43 A resolution and found that PMP binds non-covalently at the PLP site of the enzyme and displays significant disorder. However, the previously reported structure of recombinant Af(IscU-D35A-IscS)(2) contains an in vivo generated [Fe(2)S(2)] species within AfIscU and the question arises as to how its sulfides were generated. Here, we report that adding PLP to AfIscS produces an enzyme that displays in vitrol-cysteine desulfurase activity mediating the synthesis of a stable holo Af(IscU-D35A-IscS) complex. | ||
- | + | Crystal structure and functional studies of an unusual l-cysteine desulfurase from Archaeoglobus fulgidus.,Yamanaka Y, Zeppieri L, Nicolet Y, Marinoni EN, de Oliveira JS, Odaka M, Dean DR, Fontecilla-Camps JC Dalton Trans. 2012 Nov 19. PMID:23160436<ref>PMID:23160436</ref> | |
- | + | ||
- | == | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
- | + | </div> | |
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Archaeoglobus fulgidus dsm 4304]] | [[Category: Archaeoglobus fulgidus dsm 4304]] | ||
[[Category: Cysteine desulfurase]] | [[Category: Cysteine desulfurase]] | ||
- | [[Category: Dean, D R | + | [[Category: Dean, D R]] |
- | [[Category: Fontecilla-Camps, J C | + | [[Category: Fontecilla-Camps, J C]] |
- | [[Category: Marinoni, E N | + | [[Category: Marinoni, E N]] |
- | [[Category: Masafumi, O | + | [[Category: Masafumi, O]] |
- | [[Category: Nicolet, Y | + | [[Category: Nicolet, Y]] |
- | [[Category: Oliveira, J S.de | + | [[Category: Oliveira, J S.de]] |
- | [[Category: Yamanaka, Y | + | [[Category: Yamanaka, Y]] |
- | [[Category: Zeppieri, L | + | [[Category: Zeppieri, L]] |
[[Category: Transferase]] | [[Category: Transferase]] | ||
[[Category: Transferase and isc]] | [[Category: Transferase and isc]] |
Revision as of 12:47, 21 December 2014
Crystal structure and functional studies of an unusual L-cysteine desulfurase from Archaeoglobus fulgidus.
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