4hyt
From Proteopedia
(Difference between revisions)
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- | + | ==Na,K-ATPase in the E2P state with bound ouabain and Mg2+ in the cation-binding site== | |
- | + | <StructureSection load='4hyt' size='340' side='right' caption='[[4hyt]], [[Resolution|resolution]] 3.40Å' scene=''> | |
- | { | + | == Structural highlights == |
+ | <table><tr><td colspan='2'>[[4hyt]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HYT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HYT FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=17F:O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC-9-ENOYLOXY]PROPYL}OXY)(HYDROXY)PHOSPHORYL]-L-SERINE'>17F</scene>, <scene name='pdbligand=1AT:BETA-D-FRUCTOFURANOSYL+6-O-DECANOYL-ALPHA-D-GLUCOPYRANOSIDE'>1AT</scene>, <scene name='pdbligand=1DS:1-O-DECANOYL-BETA-D-TAGATOFURANOSYL+BETA-D-ALLOPYRANOSIDE'>1DS</scene>, <scene name='pdbligand=CE1:O-DODECANYL+OCTAETHYLENE+GLYCOL'>CE1</scene>, <scene name='pdbligand=CLR:CHOLESTEROL'>CLR</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=OBN:OUABAIN'>OBN</scene></td></tr> | ||
+ | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PHD:ASPARTYL+PHOSPHATE'>PHD</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3kdp|3kdp]], [[3n23|3n23]]</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sodium/potassium-exchanging_ATPase Sodium/potassium-exchanging ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.9 3.6.3.9] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hyt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4hyt RCSB], [http://www.ebi.ac.uk/pdbsum/4hyt PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The Na(+),K(+)-ATPase maintains electrochemical gradients for Na(+) and K(+) that are critical for animal cells. Cardiotonic steroids (CTSs), widely used in the clinic and recently assigned a role as endogenous regulators of intracellular processes, are highly specific inhibitors of the Na(+),K(+)-ATPase. Here we describe a crystal structure of the phosphorylated pig kidney Na(+),K(+)-ATPase in complex with the CTS representative ouabain, extending to 3.4 A resolution. The structure provides key details on CTS binding, revealing an extensive hydrogen bonding network formed by the beta-surface of the steroid core of ouabain and the side chains of alphaM1, alphaM2, and alphaM6. Furthermore, the structure reveals that cation transport site II is occupied by Mg(2+), and crystallographic studies indicate that Rb(+) and Mn(2+), but not Na(+), bind to this site. Comparison with the low-affinity [K2]E2-MgFx-ouabain structure [Ogawa et al. (2009) Proc Natl Acad Sci USA 106(33):13742-13747) shows that the CTS binding pocket of [Mg]E2P allows deep ouabain binding with possible long-range interactions between its polarized five-membered lactone ring and the Mg(2+). K(+) binding at the same site unwinds a turn of alphaM4, dragging residues Ile318-Val325 toward the cation site and thereby hindering deep ouabain binding. Thus, the structural data establish a basis for the interpretation of the biochemical evidence pointing at direct K(+)-Mg(2+) competition and explain the well-known antagonistic effect of K(+) on CTS binding. | ||
- | + | Crystal structure of the high-affinity Na+,K+-ATPase-ouabain complex with Mg2+ bound in the cation binding site.,Laursen M, Yatime L, Nissen P, Fedosova NU Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):10958-63. doi:, 10.1073/pnas.1222308110. Epub 2013 Jun 17. PMID:23776223<ref>PMID:23776223</ref> | |
- | + | ||
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | + | </div> | |
- | + | == References == | |
- | == | + | <references/> |
- | + | __TOC__ | |
+ | </StructureSection> | ||
[[Category: Sodium/potassium-exchanging ATPase]] | [[Category: Sodium/potassium-exchanging ATPase]] | ||
[[Category: Sus scrofa]] | [[Category: Sus scrofa]] | ||
- | [[Category: Fedosova, N U | + | [[Category: Fedosova, N U]] |
- | [[Category: Laursen, M | + | [[Category: Laursen, M]] |
- | [[Category: Nissen, P | + | [[Category: Nissen, P]] |
- | [[Category: Yatime, L | + | [[Category: Yatime, L]] |
[[Category: Hydrolase-membrane protein complex]] | [[Category: Hydrolase-membrane protein complex]] | ||
[[Category: Membrane transporter]] | [[Category: Membrane transporter]] |
Revision as of 12:57, 21 December 2014
Na,K-ATPase in the E2P state with bound ouabain and Mg2+ in the cation-binding site
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