4i3f
From Proteopedia
(Difference between revisions)
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- | + | ==Crystal structure of serine hydrolase CCSP0084 from the polyaromatic hydrocarbon (PAH)-degrading bacterium Cycloclasticus zankles== | |
- | + | <StructureSection load='4i3f' size='340' side='right' caption='[[4i3f]], [[Resolution|resolution]] 1.69Å' scene=''> | |
- | + | == Structural highlights == | |
+ | <table><tr><td colspan='2'>[[4i3f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cycloclasticus_sp._p1 Cycloclasticus sp. p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I3F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4I3F FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Q91_2195 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=385025 Cycloclasticus sp. P1])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4i3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i3f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4i3f RCSB], [http://www.ebi.ac.uk/pdbsum/4i3f PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Several members of C-C meta-cleavage product (MCP) hydrolases family demonstrate an unusual ability to hydrolyze esters as well as the MCPs (including those from mono- and bicyclic aromatics). While the molecular mechanisms responsible for such substrate promiscuity are starting to emerge the full understanding of these complex enzymes is far from complete. Herein, we describe six distinct alpha/beta hydrolases identified through genomic approaches, four of which demonstrate the unprecedented characteristic of activity towards a broad spectrum of substrates including p-nitrophenyl, halogenated, fatty acyl, aryl, glycerol, cinnamoyl and carbohydrate esters, lactones, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate and 2-hydroxy-6-oxohepta-2,4-dienoate. Using structural analysis and site-directed mutagenesis we have identified the three residues (S32, V130 and W144) determining the unusual substrate specificity of one of these proteins, CCSP0084. The results may open up new research avenues into comparative catalytic models, structural and mechanistic studies, and biotechnological applications of MCP hydrolases. | ||
- | + | Single residues dictate the co-evolution of dual esterases - MCP hydrolases from the alpha/beta hydrolase family.,Alcaide M, Tornes J, Stogios PJ, Xu X, Gertler C, Di Leo R, Bargiela R, Lafraya A, Guazzaroni ME, Lopez-Cortes N, Chernikova TN, Golyshina OV, Nechitaylo TY, Plumeier I, Pieper DH, Yakimov MM, Savchenko A, Golyshin PN, Ferrer M Biochem J. 2013 Jun 10. PMID:23750508<ref>PMID:23750508</ref> | |
- | + | ||
- | == | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
- | + | </div> | |
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Cycloclasticus sp. p1]] | [[Category: Cycloclasticus sp. p1]] | ||
- | [[Category: Alcaide, M | + | [[Category: Alcaide, M]] |
- | [[Category: Cui, H | + | [[Category: Cui, H]] |
- | [[Category: Dong, A | + | [[Category: Dong, A]] |
- | [[Category: Ferrer, M | + | [[Category: Ferrer, M]] |
- | [[Category: Gertler, C | + | [[Category: Gertler, C]] |
- | [[Category: Golyshin, P N | + | [[Category: Golyshin, P N]] |
- | [[Category: Savchenko, A | + | [[Category: Savchenko, A]] |
- | [[Category: Stogios, P J | + | [[Category: Stogios, P J]] |
- | [[Category: Tornes, J | + | [[Category: Tornes, J]] |
- | [[Category: Xu, X | + | [[Category: Xu, X]] |
- | [[Category: Yakimov, M M | + | [[Category: Yakimov, M M]] |
[[Category: Alpha and beta protein]] | [[Category: Alpha and beta protein]] | ||
[[Category: Alpha/beta hydrolase fold]] | [[Category: Alpha/beta hydrolase fold]] |
Revision as of 13:05, 21 December 2014
Crystal structure of serine hydrolase CCSP0084 from the polyaromatic hydrocarbon (PAH)-degrading bacterium Cycloclasticus zankles
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Categories: Cycloclasticus sp. p1 | Alcaide, M | Cui, H | Dong, A | Ferrer, M | Gertler, C | Golyshin, P N | Savchenko, A | Stogios, P J | Tornes, J | Xu, X | Yakimov, M M | Alpha and beta protein | Alpha/beta hydrolase fold | Alpha/beta-hydrolases superfamily | Carbon-carbon bond hydrolase family | Esterase | Hydrolase | Serine hydrolase