1sgu
From Proteopedia
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| - | [[Image:1sgu.gif|left|200px]] | + | [[Image:1sgu.gif|left|200px]] |
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| - | '''Comparing the Accumulation of Active Site and Non-active Site Mutations in the HIV-1 Protease''' | + | {{Structure |
| + | |PDB= 1sgu |SIZE=350|CAPTION= <scene name='initialview01'>1sgu</scene>, resolution 1.90Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=MK1:N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE'>MK1</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''Comparing the Accumulation of Active Site and Non-active Site Mutations in the HIV-1 Protease''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1SGU is a [ | + | 1SGU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SGU OCA]. |
==Reference== | ==Reference== | ||
| - | Comparing the accumulation of active- and nonactive-site mutations in the HIV-1 protease., Clemente JC, Moose RE, Hemrajani R, Whitford LR, Govindasamy L, Reutzel R, McKenna R, Agbandje-McKenna M, Goodenow MM, Dunn BM, Biochemistry. 2004 Sep 28;43(38):12141-51. PMID:[http:// | + | Comparing the accumulation of active- and nonactive-site mutations in the HIV-1 protease., Clemente JC, Moose RE, Hemrajani R, Whitford LR, Govindasamy L, Reutzel R, McKenna R, Agbandje-McKenna M, Goodenow MM, Dunn BM, Biochemistry. 2004 Sep 28;43(38):12141-51. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15379553 15379553] |
[[Category: HIV-1 retropepsin]] | [[Category: HIV-1 retropepsin]] | ||
[[Category: Human immunodeficiency virus 1]] | [[Category: Human immunodeficiency virus 1]] | ||
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[[Category: Reutzel, R.]] | [[Category: Reutzel, R.]] | ||
[[Category: MK1]] | [[Category: MK1]] | ||
| - | [[Category: active site | + | [[Category: active site mutation]] |
[[Category: hiv-1 protease]] | [[Category: hiv-1 protease]] | ||
[[Category: indinavir]] | [[Category: indinavir]] | ||
| - | [[Category: non-active site | + | [[Category: non-active site mutation]] |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:04:43 2008'' |
Revision as of 12:04, 20 March 2008
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| , resolution 1.90Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Activity: | HIV-1 retropepsin, with EC number 3.4.23.16 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Comparing the Accumulation of Active Site and Non-active Site Mutations in the HIV-1 Protease
Overview
Protease inhibitor resistance still poses one of the greatest challenges in treating HIV. To better design inhibitors able to target resistant proteases, a deeper understanding is needed of the effects of accumulating mutations and the contributions of active- and nonactive-site mutations to the resistance. We have engineered a series of variants containing the nonactive-site mutations M46I and I54V and the active-site mutation I84V. These mutations were added to a protease clone (V6) isolated from a pediatric patient on ritonavir therapy. This variant possessed the ritonavir-resistance-associated mutations in the active-site (V32I and V82A) and nonactive-site mutations (K20R, L33F, M36I, L63P, A71V, and L90M). The I84V mutation had the greatest effect on decreasing catalytic efficiency, 10-fold when compared to the pretherapy clone LAI. The decrease in catalytic efficiency was partially recovered by the addition of mutations M46I and I54V. The M46I and I54V were just as effective at decreasing inhibitor binding as the I84V mutation when compared to V6 and LAI. The V6(54/84) variant showed over 1000-fold decrease in inhibitor-binding strength to ritonavir, indinavir, and nelfinavir when compared to LAI and V6. Crystal-structure analysis of the V6(54/84) variant bound to ritonavir and indinavir shows structural changes in the 80's loops and active site, which lead to an enlarged binding cavity when compared to pretherapy structures in the Protein Data Bank. Structural changes are also seen in the 10's and 30's loops, which suggest possible changes in the dynamics of flap opening and closing.
About this Structure
1SGU is a Single protein structure of sequence from Human immunodeficiency virus 1. Full crystallographic information is available from OCA.
Reference
Comparing the accumulation of active- and nonactive-site mutations in the HIV-1 protease., Clemente JC, Moose RE, Hemrajani R, Whitford LR, Govindasamy L, Reutzel R, McKenna R, Agbandje-McKenna M, Goodenow MM, Dunn BM, Biochemistry. 2004 Sep 28;43(38):12141-51. PMID:15379553
Page seeded by OCA on Thu Mar 20 14:04:43 2008
Categories: HIV-1 retropepsin | Human immunodeficiency virus 1 | Single protein | Abandje-McKenna, M. | Clemente, J C. | Dunn, B M. | Goodenow, M M. | Govindasamy, L. | Hemrajani, R. | Mckenna, R. | Moose, R E. | Reutzel, R. | MK1 | Active site mutation | Hiv-1 protease | Indinavir | Non-active site mutation
