4nc2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_4nc2| PDB=4nc2 | SCENE= }}
+
==Crystal structure of TcdB-B1 bound to B39 VHH==
-
===Crystal structure of TcdB-B1 bound to B39 VHH===
+
<StructureSection load='4nc2' size='340' side='right' caption='[[4nc2]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_24311789}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4nc2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_difficilis"_hall_and_o'toole_1935 "bacillus difficilis" hall and o'toole 1935] and [http://en.wikipedia.org/wiki/Camelus_glama Camelus glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NC2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NC2 FirstGlance]. <br>
 +
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4nbx|4nbx]], [[4nby|4nby]], [[4nbz|4nbz]], [[4nc0|4nc0]], [[4nc1|4nc1]], [[2g7c|2g7c]]</td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tcdB, toxB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1496 "Bacillus difficilis" Hall and O'Toole 1935]), VHH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9844 Camelus glama])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nc2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nc2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4nc2 RCSB], [http://www.ebi.ac.uk/pdbsum/4nc2 PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Clostridium difficile infection (CDI) is a serious and highly prevalent nosocomial disease in which the two large, Rho-glucosylating toxins TcdA and TcdB are the main virulence factors. We report for the first time crystal structures revealing how neutralizing and non-neutralizing single-domain antibodies (sdAbs) recognize the receptor-binding domains (RBDs) of TcdA and TcdB. Surprisingly, the complexes formed by two neutralizing antibodies recognizing TcdA do not show direct interference with the previously identified carbohydrate-binding sites, suggesting that neutralization of toxin activity may be mediated by mechanisms distinct from steric blockage of receptor binding. A camelid sdAb complex also reveals the molecular structure of the TcdB RBD for the first time, facilitating the crystallization of a strongly negatively charged protein fragment that has resisted previous attempts at crystallization and structure determination. Electrospray ionization mass spectrometry measurements confirm the stoichiometries of sdAbs observed in the crystal structures. These studies indicate how key epitopes in the RBDs from TcdA and TcdB are recognized by sdAbs, providing molecular insights into toxin structure and function, and providing for the first time a basis for the design of highly specific toxin-specific therapeutic and diagnostic agents.
-
==Function==
+
Structural Basis for Antibody Recognition in the Receptor-Binding Domains of Toxins A and B from Clostridium difficile.,Murase T, Eugenio L, Schorr M, Hussack G, Tanha J, Kitova EN, Klassen JS, Ng KK J Biol Chem. 2013 Dec 5. PMID:24311789<ref>PMID:24311789</ref>
-
[[http://www.uniprot.org/uniprot/TOXB_CLODI TOXB_CLODI]] Cytotoxin.
+
-
==About this Structure==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[4nc2]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NC2 OCA].
+
</div>
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:024311789</ref><references group="xtra"/><references/>
+
__TOC__
-
[[Category: Eugenio, L.]]
+
</StructureSection>
-
[[Category: Hussack, G.]]
+
[[Category: Bacillus difficilis hall and o'toole 1935]]
-
[[Category: Kitova, E N.]]
+
[[Category: Camelus glama]]
-
[[Category: Klassen, J S.]]
+
[[Category: Eugenio, L]]
-
[[Category: Murase, T.]]
+
[[Category: Hussack, G]]
-
[[Category: Ng, K K.S.]]
+
[[Category: Kitova, E N]]
-
[[Category: Schorr, M.]]
+
[[Category: Klassen, J S]]
-
[[Category: Tanha, J.]]
+
[[Category: Murase, T]]
 +
[[Category: Ng, K K.S]]
 +
[[Category: Schorr, M]]
 +
[[Category: Tanha, J]]
[[Category: Antibody-antigen complex]]
[[Category: Antibody-antigen complex]]
[[Category: Immune system]]
[[Category: Immune system]]

Revision as of 16:26, 21 December 2014

Crystal structure of TcdB-B1 bound to B39 VHH

4nc2, resolution 2.50Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools