1svm

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[[Image:1svm.gif|left|200px]]<br /><applet load="1svm" size="350" color="white" frame="true" align="right" spinBox="true"
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[[Image:1svm.gif|left|200px]]
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caption="1svm, resolution 1.94&Aring;" />
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'''Co-crystal structure of SV40 large T antigen helicase domain and ATP'''<br />
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{{Structure
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|PDB= 1svm |SIZE=350|CAPTION= <scene name='initialview01'>1svm</scene>, resolution 1.94&Aring;
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|SITE=
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|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene> and <scene name='pdbligand=ATP:ADENOSINE-5'-TRIPHOSPHATE'>ATP</scene>
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|ACTIVITY=
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|GENE=
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}}
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'''Co-crystal structure of SV40 large T antigen helicase domain and ATP'''
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==Overview==
==Overview==
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==About this Structure==
==About this Structure==
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1SVM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Simian_virus_40 Simian virus 40] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=ATP:'>ATP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. The following page contains interesting information on the relation of 1SVM with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb80_1.html AAA+ Proteases]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SVM OCA].
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1SVM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Simian_virus_40 Simian virus 40]. The following page contains interesting information on the relation of 1SVM with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb80_1.html AAA+ Proteases]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SVM OCA].
==Reference==
==Reference==
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Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen., Gai D, Zhao R, Li D, Finkielstein CV, Chen XS, Cell. 2004 Oct 1;119(1):47-60. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15454080 15454080]
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Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen., Gai D, Zhao R, Li D, Finkielstein CV, Chen XS, Cell. 2004 Oct 1;119(1):47-60. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15454080 15454080]
[[Category: AAA+ Proteases]]
[[Category: AAA+ Proteases]]
[[Category: Simian virus 40]]
[[Category: Simian virus 40]]
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[[Category: aaa+ fold]]
[[Category: aaa+ fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:05:40 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:10:11 2008''

Revision as of 12:10, 20 March 2008

Image:1svm.gif


PDB ID 1svm

Drag the structure with the mouse to rotate
, resolution 1.94Å
Ligands: , and
Coordinates: save as pdb, mmCIF, xml



Co-crystal structure of SV40 large T antigen helicase domain and ATP


Overview

The large tumor antigen (LTag) of simian virus 40, an AAA(+) protein, is a hexameric helicase essential for viral DNA replication in eukaryotic cells. LTag functions as an efficient molecular machine powered by ATP binding and hydrolysis for origin DNA melting and replication fork unwinding. To understand how ATP binding and hydrolysis are coupled to conformational changes, we have determined high-resolution structures ( approximately 1.9 A) of LTag hexamers in distinct nucleotide binding states. The structural differences of LTag in various nucleotide states detail the molecular mechanisms of conformational changes triggered by ATP binding/hydrolysis and reveal a potential mechanism of concerted nucleotide binding and hydrolysis. During these conformational changes, the angles and orientations between domains of a monomer alter, creating an "iris"-like motion in the hexamer. Additionally, six unique beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.

About this Structure

1SVM is a Single protein structure of sequence from Simian virus 40. The following page contains interesting information on the relation of 1SVM with [AAA+ Proteases]. Full crystallographic information is available from OCA.

Reference

Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen., Gai D, Zhao R, Li D, Finkielstein CV, Chen XS, Cell. 2004 Oct 1;119(1):47-60. PMID:15454080

Page seeded by OCA on Thu Mar 20 14:10:11 2008

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